Query= MSMg01no499_h20.b1 MSMg01no499_h20.b1 CHROMAT_FILE:
MSMg01no499_h20.b1 PHD_FILE: MSMg01no499_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:53 2005
(684 letters)
>mm_chr11_46007404_46008488
Length = 1085
Score = 1191 bits (616), Expect = 0.0
Identities = 664/692 (95%), Gaps = 23/692 (3%)
Strand = Plus / Plus
Query: 1 gaattctttttaaaatcc---ttaaaatctaagcttttttcttgatctttaaatacatta 57
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctttttaaaa--cattttaaaatctaagcttttttcttgatctttaaatacatta 258
Query: 58 aaaaaaaaatcaaaggggtggggggcaaggaccactagagaggaaagagcattgaacttg 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 259 aaaaaaaaatcaaaggggtggggggcaaggaccactagagaggaaagagcattgaagttg 318
Query: 118 tccagagtttgcaggcaagtgctgcaaaaatggaatctctgtcctcaaagcgaggacctc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tccagagtttgcaggcaagtgctgcaaaaatggaatctctgtcctcaaagcgaggacctc 378
Query: 178 aatttattgggatcaaatatcttgagcagaatgtgactcttcccagagggtcaactgttg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatttattgggatcaaatatcttgagcagaatgtgactcttcccagagggtcaactgttg 438
Query: 238 gggtcaggagtgcagggtagaagggatgagctgccaggattttt-----gccttatgaac 292
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 439 gggtcaggagtgcagggtagaagggatgagctgccagga-----aggcggccttatgaac 493
Query: 293 agcccaaatctctacagagcagtgaggggacactaagcggggaaagtctgtttatcacat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agcccaaatctctacagagcagtgaggggacactaagcggggaaagtctgtttatcacat 553
Query: 353 tctatccccagccagagctgacgatctggaaagtggaatctgcctctgggatacagctat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctatccccagccagagctgacgatctggaaagtggaatctgcctctgggatacagctat 613
Query: 413 ggtcattgaaaaataatcagactaagaattaacagtgccagacaggaggactggacagtt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggtcattgaaaaataatcagactaagaattaacagtgccagacaggaggactggacagtt 673
Query: 473 tctgtttcaaaccacaaccctacactacaaatgctcctactcttgctcaaagagaccaca 532
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 674 tctgtttcaaaccacaaccctacactacaaatgctcctactcttgctcagagagacc--- 730
Query: 533 gggcccagagttagcggagttgtccaatctacagtaaggtctgagtatgtggtgtgcagt 592
||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 731 -----cagagttagtagagttgtccaatctacagcaaggtctgagtatgtggtgtgcagt 785
Query: 593 gatatatctgagaagaggcaggtcttctggctctattcccagagattcaaagttagtgtc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gatatatctgagaagaggcaggtcttctggctctattcccagagattcaaagttagtgtc 845
Query: 653 cagaaaggaacactctggtgtgccatccttaa 684
||||||||||||||||||||||||||||||||
Sbjct: 846 cagaaaggaacactctggtgtgccatccttaa 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space: 724550
Effective search space used: 724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_h20.g1 MSMg01no499_h20.g1 CHROMAT_FILE:
MSMg01no499_h20.g1 PHD_FILE: MSMg01no499_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:53 2005
(647 letters)
>mm_chr11_46168956_46169999
Length = 1044
Score = 1058 bits (547), Expect = 0.0
Identities = 623/649 (95%), Gaps = 7/649 (1%)
Strand = Plus / Minus
Query: 1 tctgggaatgggctgtgtctattccctgccgtgggatctgattgccctttct-acattaa 59
|||||||||||||||||||||||||||||| |||||||||||| |||||||| | |||||
Sbjct: 844 tctgggaatgggctgtgtctattccctgccatgggatctgattcccctttctga-attaa 786
Query: 60 agtgtttgtaaaatgggctcttgaggccctgctagcctctgatttgatggatctgggcaa 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agtgttggtaaaatgggctcttgaggccctgctagcctctgatttgatggatctgggcaa 726
Query: 120 gcctgtgaatcagatgagccaacataggaacaaatagatttctgtgaaaagtaaatggct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gcctgtgaatcagatgagccaacataggaacaaatagatttctgtgaaaagtaaatggct 666
Query: 180 tcttggaattcactgggatcagcatctacctcacagaatgcaggaagtggggaactgctg 239
||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |||||||
Sbjct: 665 tcttggaattcactgggatgggcatcta-ctcgcagaatgcaggaagtgggggactgctg 607
Query: 240 ctgtgtgtatctgttcagctccacaaaattctaactcacacagaatgcctacttgacgaa 299
||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||
Sbjct: 606 ttgtgtgtatctgttcagctccac--aattctaactcacacataatgcctacttgatgaa 549
Query: 300 agcaactgcctctgcaaaca-accccagtggatagagagagccgacaggctgacctaaac 358
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgcaactgcctctgcaaa-agaccccagtggatagagagagccgacaggctgacctaaac 490
Query: 359 taaatccaggatccatggactcaccccctgctcttgtctttgcttggtttgttgtctctt 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 489 taaatccaggatccatggactcactccctgctcttgtctttgcttggtttgttgtctctt 430
Query: 419 ccccagcggtcatttcaggaacctgaagaaaccctggtcatagccttgtacgactaccaa 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 429 ccccagcggtcatttcaggaacctgaagaaaccctggtcattgccttgtacgactaccaa 370
Query: 479 accaacgaccctcaggagctcgcgcttcggtgtgatgaagagtactacctgctggacagc 538
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 369 accaacgaccctcaggagctcgcactgcggtgtgatgaagagtactacctgctggacagc 310
Query: 539 tccgagatccactggtggagggttcaagacaaaaatgggtaagggaagctgcacatggct 598
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 309 tccgagatccactggtggagggttcaagacaaaaatgggtaagggaagctgtgcatggct 250
Query: 599 actgtgggaacaaaatgactatgggaaggaatgccccatctccttctgc 647
||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 249 actgtgggaacaaaacgactatgggaaggaatgccccatctcctgctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1044
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1034
Effective search space: 658658
Effective search space used: 658658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
