Query= MSMg01no500_p20.b1 MSMg01no500_p20.b1 CHROMAT_FILE:
MSMg01no500_p20.b1 PHD_FILE: MSMg01no500_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:44 2005
(556 letters)
>mm_chr11_4246121_4247075
Length = 955
Score = 977 bits (505), Expect = 0.0
Identities = 544/559 (97%), Gaps = 7/559 (1%)
Strand = Plus / Minus
Query: 1 cagaaactggctgcctccaggggactggagctcctgaaacttggaatgccagattctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cagaaactggctgcctccaggggactggagctcctgaaacttggaatgccagattctgat 696
Query: 61 actggcagcagggttatgatctgggccaagcaagcccacaggaaagcaggtttggatcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 actggcagcagggttatgatctgggccaagcaagcccacaggaaagcaggtttggatcgg 636
Query: 121 ttatgcgtgcttgggcttcctgttttatagatgtcttgtgaggtgtctctatctctgctt 180
||||||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct: 635 ttatgcgtgattggtcttcctgttttatagatgtcttgtgaggtgtcac-atctccgctt 577
Query: 181 taatgtacctctctctgactctcacaggtccaaagaatgaattttgtgcaaattgtatcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 576 taatgtacctctctctgactctcacaggtccaaagaatgaattttgtgcacattg-agcc 518
Query: 241 ---tgntttgaaagttccagaaagaagaagaaggtcagcgaaccagtgacagtcttcatt 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aagt--tttgaaagttccagaaagaagaagaaggtcagcgaaccagtgacagtcttcatt 460
Query: 298 cctaacagaaaatgaaacttaggtgcctttgctacacctgttttgcacaaatctatgaag 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 459 cctaacagaaaatgaaacttaggtgcctttgctacacctgttttgcaaaaatctatgaag 400
Query: 358 tgctgtaacaggataatgaccaagccttctttcttcctacggctttgctccactctctcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgctgtaacaggataatgaccaagccttctttcttcctacggctttgctccactctctcc 340
Query: 418 tcagtctgtgaaaggctaagctattgagcaagccctaggttcacttctccagaaggaacc 477
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 339 tcagtctgtgaaaggctaagctattgagcaggccctaggttcacttctccagaaggaacc 280
Query: 478 tggatcgcagagctgccttgggatgggatgacctcgcggccgagttagagaggagacacg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tggatcgcagagctgccttgggatgggatgacctcgcggccgagttagagaggagacacg 220
Query: 538 ctctgtgtttgcaaaaaac 556
|||||||||||||||||||
Sbjct: 219 ctctgtgtttgcaaaaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_p20.g1 MSMg01no500_p20.g1 CHROMAT_FILE:
MSMg01no500_p20.g1 PHD_FILE: MSMg01no500_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:44 2005
(261 letters)
>mm_chr11_4066507_4067167
Length = 661
Score = 487 bits (252), Expect = e-142
Identities = 258/260 (99%)
Strand = Plus / Plus
Query: 1 gtttgcagtccagcctctctttgtgggttagtgggcgggcataattatctctgctgtgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttgcagtccagcctctctttgtgggttagtgggcgggcataattatctctgctgtgca 260
Query: 61 cgatcacaaccaccatgggcagaaataaagttactatcaccttctagaagcttctgcaca 120
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 261 cgatcacaaccaccatgggcagaaataaagttaccatcagcttctagaagcttctgcaca 320
Query: 121 ctggttgtgaagctctgtcctccaggctgaggttgtgaagagcccagcagagcaactgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggttgtgaagctctgtcctccaggctgaggttgtgaagagcccagcagagcaactgtt 380
Query: 181 taaccaaggcttatgatttattgacccaaggagtgagggttaatttaattgtagtgtagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaccaaggcttatgatttattgacccaaggagtgagggttaatttaattgtagtgtagg 440
Query: 241 agcaaccttttggcccagct 260
||||||||||||||||||||
Sbjct: 441 agcaaccttttggcccagct 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space: 164304
Effective search space used: 164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
