BAC Information

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BAC

Clone NameMSMg01-501C10
Chromosome11 (Build37)
Map Location 101,454,100 - 101,454,666
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a
Downstream geneLOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501C10.T7 (MSMg01no501_c10.b1)MSMg01-501C10.TJ (MSMg01no501_c10.g1)
ACCAG576819AG576820
length688716
length of high quality
(start - end)		555 (46 - 600)598 (66 - 663)
definitionCHROMAT_FILE: MSMg01no501_c10.b1 PHD_FILE: MSMg01no501_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:56 2005CHROMAT_FILE: MSMg01no501_c10.g1 PHD_FILE: MSMg01no501_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATATCGAGAGGATCCGCGGAATTCAGAAGAGTTTCTTGCAGCAA
TGGGCTCAGGACACGTGGCCCTGGAAAGGAGACGAGCTTGCCTGCTAAAG
TTCTCAAGCTCCTTTCTTCCTAGGTTGTCATACCTTTCACTTAGCAGAGG
GCCAGGAGGTTCCCAGTCCAAGCTGGAAGAGGAAGCAGGGCTGGGGACCC
TCAGTATTAGTCTCCAGGAAGACACAAATCCTATGAAGGCCTTTCTGCTC
CAATTCTGAGAAAGCCTCCCTTAGTCACATCAGTCACAATGATGTGGGGG
AACCAATGGGTGATTTCGCATTAACACAGGGCATCAGCTCAGGGTCAGGA
GCTTTGCGTTGGGGTAGTCTAGGGATGATACCTGAATGGTTATCAGTGGG
ACAGTGTGGAGACTGGCTTGGAACTAGAATAGTAATCAAATGTATCTAGG
GATACAAAATGGGAGAGAGCAAGCCTTGTGGATAATCACTCAGACGCCAG
AGAAGTAGAACATGATTCAAAAGGCTTGGAAGCCCGTGTGCCTATTAGAA
CAGAAGAGGAGGTAGCCAGTTGGTAAAGTTCTTTCATCTTGCACGTACCA
AGGCCTTAGCTTCATCCTCAGAACCTANGTGTAATGGCTGGTTTCGTATG
CCAACTTGACACATGCTAGAGTCATCACAGAGAAAGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTACCCTCCAAGGGCTGATGGACTGGGGTGGTCAAC
ACAAAGCATCCTAGGATTCAACCAAGCAAGACGTCTGAGTAGCAGTGAGC
TGGGAATTGAAACTGTGTCCTATGGAAGAGTAGCCACTGCTCTTAAAAAC
TGGGCCTCTCTAGCTGGGTGTGGTGGCACACTCCTTTAAACCCAGCACTC
TGGAGGTAAAGGTAGGTGGATTTTCAAGTTTGAGTCCAACCTGGTCTACA
AATTGTGTTCTTGTATAGCTAGGGCTGTTACAGAGAGAAACCCTATCTTG
AAAAAACAAAAAACAAAAACTGAGAGAGAGAGAGAGAGAGAAAGAGAGAA
TCCAAAAACAAAACAAAACTAGGTCATCTCTCCGGTCTCATAGTTTATAA
TTAAAATATTAATTAATTAATTAATTTATTTATTTATTTATTTATTTATT
TATTGGAAGGAGCATGTCACTTTACACACAAATGGATGTTACATTTGTGG
GGTTTGGTTCTCTCCTTCCAGGATGTGGGACCTGAGCCTCAAACTCAGAT
CAGTATCAAGCACCTTTACCTGCTGGGCCATCTCACTGGCCCCATAATCT
ACATGCTTTTAATGTCAGCAACAAATAAAAAAATTACAAATGTCAATAGC
CAGTTCATATAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_c10.b1 MSMg01no501_c10.b1 CHROMAT_FILE:
MSMg01no501_c10.b1 PHD_FILE: MSMg01no501_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:56 2005
         (555 letters)



>mm_chr11_101453958_101454911
          Length = 954

 Score =  982 bits (508), Expect = 0.0
 Identities = 547/568 (96%), Gaps = 14/568 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaatgggctcaggacacgtggccctggaaaggagacgagcttgcctgctaaagttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 agcaatgggctcaggacacgtggccctggaaaggagacgagcttgcctgctaaagttctc 650

                                                                       
Query: 61  aagctcctttcttcctaggttgtcatacctttcacttagcagagggccaggaggttccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aagctcctttcttcctaggttgtcatacctttcacttagcagagggccaggaggttccca 590

                                                                       
Query: 121 gtccaagctggaagaggaagcagggctggggaccctcagtattagtctccaggaagacac 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtccaagctggaagaggaggcagggctggggaccctcagtattagtctccaggaagacac 530

                                                                       
Query: 181 aaatcctatgaaggcctttctgctccaattctgagaaagcctcccttagtcacatcagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaatcctatgaaggcctttctgctccaattctgagaaagcctcccttagtcacatcagtc 470

                                                                       
Query: 241 acaatgatgtgggggaaccaatgggtgatttcgcattaacacagggcatcagctcagggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 acaatgatgtgggggaaccaatgggtgatttcgcattaacacagggcatcagctcagggt 410

                                                                       
Query: 301 caggagctttgcgttggggtagtctagggatgatacctgaatggttatcagtgggacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caggagctttgcgttggggtagtctagggatgatacctgaatggttatcagtgggacagt 350

                                                                       
Query: 361 gtggagactggcttggaactagaatagtaatcaaatgtatctagggatacaaaatgggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtggagactggcttggaactagaatagtaatcaaatgtatctagggatacaaaatgggag 290

                                                                       
Query: 421 agagcaagccttgtggataatcactcagacgccagagaagtagaacatgattcaaaaggc 480
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 289 agagcaagccttgtggataatcactcagaagccagagaagtagaacatgattcaaa-ggc 231

                                                                       
Query: 481 ttggaagcccgtgtgcctattagaacagaa-------------gaggaggtagccagttg 527
           ||||||||| |||||||||| |||||||||             |||||||||||||||||
Sbjct: 230 ttggaagcctgtgtgcctatcagaacagaaaagtttgtagcctgaggaggtagccagttg 171

                                       
Query: 528 gtaaagttctttcatcttgcacgtacca 555
           |||||||||| |||| |||||| |||||
Sbjct: 170 gtaaagttctctcattttgcacatacca 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space:   514480
Effective search space used:   514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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