BAC Information

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BAC

Clone NameMSMg01-503C12
Chromosome11 (Build37)
Map Location 114,032,490 - 114,032,834
singlet/doubletsinglet
Overlap genenone
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
Downstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503C12.T7 (MSMg01no503_c12.b1)MSMg01-503C12.TJ (MSMg01no503_c12.g1)
ACCAG578340AG578341
length702855
length of high quality
(start - end)
409 (84 - 492)108 (87 - 194)
definitionCHROMAT_FILE: MSMg01no503_c12.b1 PHD_FILE: MSMg01no503_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:21 2005CHROMAT_FILE: MSMg01no503_c12.g1 PHD_FILE: MSMg01no503_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTCTCTACTTAAAATTGCGGCGGTAAANGAATACACATTTTCAAAA
ACCGCGGAATCTTCCAGTTGACCAGAAAGAGAATGCTGTCGCTAATTCTC
CCTACCTCAGAGTTCACACACTGGGAAAGCATCCCTTAAATTTATTCACA
TGCTAGTTGTATTTGAAGGTCTGGCTCTGGGGGTGGGGTTGCGGTAAGGA
GAATCCTTTGTCATGAGGATGGTTCTGCTTTTATTTCCTGTTGCCGTGAT
TAAATATCCCAACAACATGAATTTCAGGGGAGAAAGGGTTTATTTTTAGC
TCCCAATTCCTGGTTACTTTCTTTCATTGCAGGGACATCACAGCAGCTGG
GGCTTGGGGGAAATGGTCAAATGGAAGCCACTGGCAAGAGCAGAGAGGAA
CGCAAAGGAGAGGGTGGAGATGCCCATGGGCTGACCTGAGATCAGCACAC
CAGTGCCTGGCTCACCCACACCAGCGCCCGCCTCATCATGCCAGCACCGG
CTCACTCTCCCACTTTCGTCCAGTCCAGGGCTCCACCCATGCAATGGTGC
CCAGCTACAAGGTGGGTCCCACCTCAGTTAACCTGGTAAGAAAACCTCTC
GCAGGCATGCCCGCAGGCCAACCCGATCTAGCTGAGTCTGAACTAAGACC
CCCTTCCCTGGTGATTCTATACATCTCGTCAACAGTTAAAACTAACCCTC
AA
TTTTTTTTTTCACAATGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAATCTACACAGGTGGGAAC
TGTCCTAGTATGCTCTGTATTACTTGTGATAAACACCATNGACCTATGCA
ACTNTGTGTGCATGTGTTGTGTGGGGGGGTGTATTGTTGGTGCGCCATTT
CCCTTTTTTTTTCTTCTTTTTTTCTTTCTCTACTTTTCTTACCTCCATTT
TTTCTTTTTTTGCTTTTTTCCCCTTTTTTTTTTTCTCTTCCCGCTGCTCT
CTTCACCGTTTTTTTTTTCTCTCTCCTTTTTTTCATTTTTAATTTTTTTT
GCCAAAAACTTTTTGCGTCGTTTTTACGGAACCCCCACCACCCCTACTTT
ATTCTTTATATCTCTTCTTTCCTTCTATTTTTTTTTTTTTTTTCCTCTCT
CTCCTCTTCTTTCTTCTCCCCTCTCNNNNTCTTTTCTTTTTAGTATTTTT
CTTTTCATCTTTTTCTCTTCTTCTTTCTTCCCGCCTCTTTCTTCCCCCCT
CCCCTTTTTTTCCTTTTTCTGACCCNCCCTCNNNNNCNNNNNNNNNNNNN
NTAAAANNNCCTACTTNNNNNNTCATCTAACATTAAAAGNCNATANNNNN
NNNNTAGTTTTTTTATTATTCCNTTATTTGATTTTATTTTTTTCTCCCCN
TTTTACCCCCAATTATAGGATGCTTTTNTTTTTNCCCNNCCNCTCTGTNC
CACGAAGTTGNTTTTTATATTTCCGTTTGGTTTNNCACCTTTATTTTTTT
CTNNNCTAATTNTNCAACAATCGTGAAAATTATTCTTTCNCGTTACGATC
GCCNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_c12.b1 MSMg01no503_c12.b1 CHROMAT_FILE:
MSMg01no503_c12.b1 PHD_FILE: MSMg01no503_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:21 2005
         (409 letters)



>mm_chr11_114032490_114033298
          Length = 809

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgtcgctaattctccctacctcagagttcacacactgggaaagcatcccttaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgctgtcgctaattctccctacctcagagttcacacactgggaaagcatcccttaaattt 286

                                                                       
Query: 61  attcacatgctagttgtatttgaaggtctggctctgggggtggggttgcggtaaggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 attcacatgctagttgtatttgaaggtctggctctgggggtggggttgcggtaaggagaa 226

                                                                       
Query: 121 tcctttgtcatgaggatggttctgcttttatttcctgttgccgtgattaaatatcccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 225 tcctttgtcatgaggatggttctgcttttatttcctgttgccgtgatgaaatatcccaac 166

                                                                       
Query: 181 aacatgaatttcaggggagaaagggtttatttttagctcccaattcctggttactttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  
Sbjct: 165 aacatgaatttcaggggagaaagggtttatttttagctcccaattcctggttacaaccca 106

                                                                       
Query: 241 tcattgcagggacatcacagcagctggggcttgggggaaatggtcaaatggaagccactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tcattgcagggacatcacagcagctggggcttgggggaaatggtcaaatggaagccactg 46

                                                        
Query: 301 gcaagagcagagaggaacgcaaaggagagggtggagatgcccatg 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  gcaagagcagagaggaacgcaaaggagagggtggagatgcccatg 1



 Score = 66.5 bits (34), Expect = 3e-15
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 324 ggagagggtggagatgcccatgggctgacctgagatca 361
           |||||||||||||||||||||||||||| |||||||||
Sbjct: 564 ggagagggtggagatgcccatgggctgatctgagatca 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)