Query= MSMg01no503_j21.b1 MSMg01no503_j21.b1 CHROMAT_FILE:
MSMg01no503_j21.b1 PHD_FILE: MSMg01no503_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:57 2005
(512 letters)
>mm_chr11_86601889_86602800
Length = 912
Score = 961 bits (497), Expect = 0.0
Identities = 511/521 (98%), Gaps = 9/521 (1%)
Strand = Plus / Plus
Query: 1 gttatcgtgaaatcctgtctcaaaacaaacaaaacaaaacaaaacaaaatagaggtcact 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 192 gttatcgtgaaatcctgtctcaaaacaaacaaaacaaaacaaaacaaaacagaggtcact 251
Query: 61 aaagttaag---------catcagcataaaaaagtcttataaagccaaagtttaaatata 111
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaagttaagtcaaataagcatcagcataaaaaagtcttataaagccaaagtttaaatata 311
Query: 112 agcaaagtgggctggagagatggttcagccgttaggggctagctcacaatcaaaaaaata 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agcaaagtgggctggagagatggttcagccgttaggggctagctcacaatcaaaaaaata 371
Query: 172 tgagcagaggaccaaatctcaataaagtgatggatgttttaaaataaaaatttcaaaaaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgagcagaggaccaaatctcaataaagtgatggatgttttaaaataaaaatttcaaaaaa 431
Query: 232 tatgaaggcaaatagttaaatactatttacttctggattcttcaatcttcaactatagca 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatgaaggcaaatagttaaatactatttacttctggattcttcaatcttcaactatagca 491
Query: 292 gtttgaggctggaaatgttcttaaatttgaaagtggcaatggtcacataatattgtgaat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtttgaggctggaaatgttcttaaatttgaaagtggcaatggtcacataatattgtgaat 551
Query: 352 ctactaacaataatttgaactgtatactttaaaatggctaaaatacttaattttatttta 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctactaacaataatttgaactgtatactttaaaatggctaaaatacttaattttatttta 611
Query: 412 ggtggattaacatttttggtttagttaaaaagcagccaacatgaaaactaaccctggaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggtggattaacatttttggtttagttaaaaagcagccaacatgaaaactaaccctggaaa 671
Query: 472 taggcttgtttcaattctcagggacacatcagtcaaatggt 512
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 taggcttgtttcaattctcagggacacatcagtcaaatggt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_j21.g1 MSMg01no503_j21.g1 CHROMAT_FILE:
MSMg01no503_j21.g1 PHD_FILE: MSMg01no503_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:57 2005
(313 letters)
>mm_chr11_86759224_86759936
Length = 713
Score = 549 bits (284), Expect = e-161
Identities = 309/328 (94%), Gaps = 17/328 (5%)
Strand = Plus / Minus
Query: 1 cttgtcgggcaacgtgaagaacggaggg-----------------gttctgttgttaaat 43
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 658 cttgtcgggcaacgtgaagaacggaggggtatttaattacttgcagttctgttgttaaat 599
Query: 44 aaagatcaactttgtcagtgtgtcccaggcttgccatagcttcccgagtgctggtgttac 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaagatcaactttgtcagtgtgtcccaggcttgccatagcttcccgagtgctggtgttac 539
Query: 104 acactgcaccatcacaccagcctggctactctcttgtcatctgtacccctgtccatcaag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acactgcaccatcacaccagcctggctactctcttgtcatctgtacccctgtccatcaag 479
Query: 164 tcacctgagctggtaaaaatagcccgagtgtgtgggctgccttcatctctgaactgttta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcacctgagctggtaaaaatagcccgagtgtgtgggctgccttcatctctgaactgttta 419
Query: 224 ttctgtcttcaccacctcctgtctcatgccacctgccagctagagctcttgctggccgca 283
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttctgtcttcaccacctcctgccccatgccacctgccagctagagctcttgctggccgca 359
Query: 284 tgctcccttctgcatgggcagtcaggtt 311
||||||||||||||||||||||||||||
Sbjct: 358 tgctcccttctgcatgggcagtcaggtt 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
