BAC Information

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BAC

Clone NameMSMg01-503P20
Chromosome11 (Build37)
Map Location 53,970,190 - 53,970,702
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2
Downstream geneLOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503P20.T7 (MSMg01no503_p20.b1)MSMg01-503P20.TJ (MSMg01no503_p20.g1)
ACCAG578975AG578976
length746717
length of high quality
(start - end)
470 (78 - 547)528 (73 - 600)
definitionCHROMAT_FILE: MSMg01no503_p20.b1 PHD_FILE: MSMg01no503_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:26 2005CHROMAT_FILE: MSMg01no503_p20.g1 PHD_FILE: MSMg01no503_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTTTTTTCTAAAATTGGGGCCGCTAAACGACTACTATAGGTTCCA
GGTCCGCGGAATTCAGAGATCTGCTTGCCACTGTCTCCTAGGATTAAATG
CATTTACTATCTTGCCTGAGCCTAAACTTTTCATGGCCACAGTGCCTCAA
GATCTGCATCACAGATGTACCCTCCATTTCTGAATTGTAGTTTATTCCAG
ATGTAGTCAAGTTGACAACCAAGGATAGCCATCACATAGTGGAATATGGT
GGTTTCAATATGCTTGGCTCATGGGAAGTGGCACTACTAGGAGATTTGGC
CTTGTTGAAGTAGGTGTAGCCTTGTTAAAGGAAGTGTGTCACTGTGGGGG
TGGACTTTGAGGTCCTATGCTCAAGTTCCACCCAGTGTGAAAGAGTCTCC
TTCTGGCTGCCTCTGGATCAAGATATAACACTCTAAGCTCCTCCTCCAGC
ACCTTGTCTACTTGCCTGCTGCCGTGCTTCCTGCCATGATGATAATGGAC
TGAACCTCTGAAACTATAAGTCAGTCCCAATTAAATGTTGTCCTTTAAAA
GAGTTGCCTTGGTCATAATGTCTCTTTACAGCAATGAAATCCCCACTAAG
ACAATAAGCTTACCCATGAACCTAGTATTCCTGTACTCATCTGACCACTG
AGCTATACAACTAAAGCACTTGTAGCCCAAACCATCAATGCTTCTATTTG
GTGAGCAGATGGGTGTAATTGGTCACGAGTCAAGAATCATGGCTGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCAGCACCTGACACTCTTATTCTTGTTTT
CCATGTGTGATCTCTCTGTGACGTACTCTGGTGGGATGTCCCAGCCGATC
TTCCAGGTCACTCATTTTCCCATTACCTGTACCTAATCTGTTTGGTGTTG
GTAAAGTCCAGTCACAAAAGCAAAAGTAAGACCACACAACAAATGAGGAA
GAAACGAGGACCACACTGTGCCATCAAAGAGAGGTCACTGTGAAGAGTGG
CACAGTATAATGGACTGGCACACACGGGAGCTAAATTCAGCTCCCAGACC
TGCAGCTCAGGGACAAAGGTGAGAGGGCTGAGTGTTAAACCTAGGACCTT
GGTAGAAACCTAACAGTCCTGTAGAGCTATAACCAAGGCCTCTGAAAACC
ATGCTGCTGTCCAACTGTTCCTGGGACTCAAGGAGGGCCCCAGAGGGCCC
TGAAGTCAAGCCTCTCTCAATAAAGAGCACTAAGAGAGTAAGGAGGTAGC
TCACTTAGAGAAGTGCTTGCCCTGCAAGCACAAGGACTTGAGTTGGACCC
CCAGAAGCCACATAAAAATGCCAGGCACAGTGGCATGCACCGTTAATCCC
AGGGCCAGGCAGGCAGAGGCAGACAGATCCCTGGGGCTCACTGGGCTTGC
TAACTTGGTGAGCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_p20.g1 MSMg01no503_p20.g1 CHROMAT_FILE:
MSMg01no503_p20.g1 PHD_FILE: MSMg01no503_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:26 2005
         (528 letters)



>mm_chr11_53969929_53970856
          Length = 928

 Score =  830 bits (429), Expect = 0.0
 Identities = 496/525 (94%), Gaps = 12/525 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcacctgacactcttattcttgttttccatgtgtgatctctctgtgacgtactctggt 60
           |||||||| ||||||||||||||||||||||||           ||||||||||||| ||
Sbjct: 774 cagcacctaacactcttattcttgttttccatg-----------tgtgacgtactct-gt 727

                                                                       
Query: 61  gggatgtcccagccgatcttccaggtcactcattttcccattacctgtacctaatctgtt 120
           |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 726 gggatgccccagccaatcttccaggtcactcattttcccattaactgtacctaatctgtt 667

                                                                       
Query: 121 tggtgttggtaaagtccagtcacaaaagcaaaagtaagaccacacaacaaatgaggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 666 tggtgttggtaaagtccagtcacaaaagcaaaagtaagaccacacaacaaatgaggaagg 607

                                                                       
Query: 181 aacgaggaccacactgtgccatcaaagagaggtcactgtgaagagtggcacagtataatg 240
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 606 aacgaggaccacattgtgccatcaaagagaggtcactgtggagagtggcacagtagaaag 547

                                                                       
Query: 241 gactggcacacacgggagctaaattcagctcccagacctgcagctcagggacaaaggtga 300
           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 546 gactgacacacacgggagctaatttcagctcccagacctgcagctcagggacaaaggtga 487

                                                                       
Query: 301 gagggctgagtgttaaacctaggaccttggtagaaacctaacagtcctgtagagctataa 360
           |||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||
Sbjct: 486 gagggctgagtgttaaacctagcaccttggcagaaacctaacagttatgtagagctataa 427

                                                                       
Query: 361 ccaaggcctctgaaaaccatgctgctgtccaactgttcctgggactcaaggagggcccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccaaggcctctgaaaaccatgctgctgtccaactgttcctgggactcaaggagggcccca 367

                                                                       
Query: 421 gagggccctgaagtcaagcctctctcaataaagagcactaagagagtaaggaggtagctc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 366 gagggccctgaagtcaagcctctctcaataaagagcactaagagagtaaggaagtggctc 307

                                                        
Query: 481 acttagagaagtgcttgccctgcaagcacaaggacttgagttgga 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acttagagaagtgcttgccctgcaagcacaaggacttgagttgga 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)