BAC Information

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BAC

Clone NameMSMg01-504D24
Chromosome11 (Build37)
Map Location 90,249,284 - 90,249,816
singlet/doubletsinglet
Overlap geneHlf
Upstream gene4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd
Downstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504D24.T7 (MSMg01no504_d24.b1)MSMg01-504D24.TJ (MSMg01no504_d24.g1)
ACCAG579174AG579175
length1,323752
length of high quality
(start - end)
---532 (69 - 600)
definitionCHROMAT_FILE: MSMg01no504_d24.b1 PHD_FILE: MSMg01no504_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:48 2005CHROMAT_FILE: MSMg01no504_d24.g1 PHD_FILE: MSMg01no504_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCCGAGCACGCTCTGTGCGCTTGTTATATTGTTTTATACTCTCTTTA
TCCTTTTCGATTGTTGCGCGTGTGGCTCCGTCATCTTCCCGCTCTCTCCT
GATAGGTTGGTGCCTTATCACTCTCCTCCCCGCCCTATTTCCTAACACGT
CTCTCTTGCCCATCATCCCATCACCATATTATTCCCCACCCGATTGTCGT
CAACAAATGATCTAGACTCTAGAGGCTATAGGAGCGGTGTATACGCGCGC
GCGTCGATCGCGGCTTGTCGAGTAATCGCGACTGACTAATAGAGAGAGCT
GCTTTCTCCACACCGTTGTCATTATATCGTAATACCTCATCACAAACCTA
TCCTTATGGACCGCGCACGAATAAACAAGCAAACTCATTCTGGATCCTCA
CATCATCTCCCGCCGCGTCATGCACGTGCGTTCGCTAGTACTTCCCTAGG
CGTCGCTATACATATATGCGTACGGTTTACTTCTGCCTACGTCTTCCCCG
TGCCTGTCTTCCTGTTCATAGCTCACACGGTTGAGTGGGCGGCGGGGCGT
GCATAATGCGTCCGCATCACCTCCTCTCATCTCTCGATCTTAATGTGTTC
TCTGCACCTCCCCGCTCCGCCGTGTTACGACCACCCGTAGTTAATAAGAC
GATCGTCCCGACGTTCGTACGAATATAAATTGACAAGACGTGAGAGAATA
TATTTAACTCGACCGTACCGAGCCGCGAACAAGTGTACACGTCGCACCGC
GATTCATACGTGGACGCGCATCAATAAATACTGCGTCCGTTGTAAAACTG
GGCAATCCGCTGTTATATATTATAATACACACCCCTCGCTGTATTATCTT
GCCGCGCGAGCCACCGACTATTACACACCCGTGTTGTAACGATGAAACAT
TATAGTATTCATGGCGTAGAACACCCCATGATTTATACTTACTCTCTCCC
GCCGTGCCCACCTACACCCGATAGATATATACTCATACATCAACATAANG
AGATCTAGAGAACACGTACTCTCTCACGCTACACGCGCAGATTTTACTCT
CGCTCGATATTCCACTGTCATCATGATATAGTAGCGCTATTATGCGCGAG
ACGCGACGNCTTACACGAGTGCTCACTCACATATGATATTGCCTTCGCTC
GCATATTCCAATATTCGTATGTACTTGCGACTCCGTCCGCGCTGCCCACA
AGTACATTATGATTTCGGATCTGCGCTCGACGCACATAATATTACTGTCA
CCCCGCCGACGTACTCTACAACACCGCTGACCATTACANTNATGTGAGTT
AGTACTGCGACGAACCACACCTN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCCAAGTCCATGTATTCCAGCTGGAAAGTAT
CTCCGTCATAGGGAAGGGTTTTGTCCCATAAGGTGGGTCCCAAGAAGGCG
GACTGGGGGACGGTCGGGCTGCTGCTCTCATCGTCCAGCTTCTTTCCTTT
GTCTTTTTCTTTACTAAATGCTGAAGAAGAAAAATGGAAAGGTGAGCTTT
GTTTTTTAAAAACAGAAAAGAAAAGGGGTCAGTCTGTCACCAGCTTTCCT
GCCATCGGTTACAAAATGACTTCTGGGGGCACCGAGGCCTCTGGCTGCTG
CCTCTGGTGGATCTAGAGTTTCGACATCTTCCTATTTACTTTGGAAAGAA
AGAGCTTTCTGGTCTGTAGGACAGGACGGGGCTACCGACTGATCTGGAAT
GAAAACAAGAGAATAATCCTTCCTCGGTGTGTTATTTGAAGGGCTAAGTC
ACCAAAATCTATACTGAGAAAATAACACCGGAGAGTATATACAACTGATG
GGATTTTTAAAGGGGACCACCGATAACTTGGGATGATTCTACCTTTTAGA
AAGTGATGACCGCAAGAATCTGAGGTCATTCTGACTTACAACCAGGGGAT
GCAGGCTTAGTCTTATAAGCAGTCCCCGCCCCCACTTCCCTTATACTACG
CGTCGTTTCTGCGGTATCCTTTCCTGTATTATCTCCATAACGGGCCAGCT
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_d24.g1 MSMg01no504_d24.g1 CHROMAT_FILE:
MSMg01no504_d24.g1 PHD_FILE: MSMg01no504_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:48 2005
         (532 letters)



>mm_chr11_90249084_90250016
          Length = 933

 Score =  969 bits (501), Expect = 0.0
 Identities = 525/533 (98%), Gaps = 1/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaagtccatgtattccagctggaaagtatctccgtcatagggaagggttttgtccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaagtccatgtattccagctggaaagtatctccgtcatagggaagggttttgtccca 260

                                                                       
Query: 61  taaggtgggtcccaagaaggcggactgggggacggtcgggctgctgctctcatcgtccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggtgggtcccaagaaggcggactgggggacggtcgggctgctgctctcatcgtccag 320

                                                                       
Query: 121 cttctttcctttgtctttttctttactaaatgctgaagaagaaaaatggaaaggtgagct 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cttctttcctttgtctttttctttactaaatgctgaagaagaaaaagggaaaggtgagct 380

                                                                       
Query: 181 ttg-ttttttaaaaacagaaaagaaaaggggtcagtctgtcaccagctttcctgccatcg 239
           ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttgttttttttaaaacagaaaagaaaaggggtcagtctgtcaccagccttcctgccatcg 440

                                                                       
Query: 240 gttacaaaatgacttctgggggcaccgaggcctctggctgctgcctctggtggatctaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gttacaaaatgacttctgggggcaccgaggcctctggctgctgcctctggtagatctaga 500

                                                                       
Query: 300 gtttcgacatcttcctatttactttggaaagaaagagctttctggtctgtaggacaggac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttcgacatcttcctatttactttggaaagaaagagctttctggtctgtaggacaggac 560

                                                                       
Query: 360 ggggctaccgactgatctggaatgaaaacaagagaataatccttcctcggtgtgttattt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggctaccgactgatctggaatgaaaacaagagaataatccttcctcggtgtgttattt 620

                                                                       
Query: 420 gaagggctaagtcaccaaaatctatactgagaaaataacaccggagagtatatacaactg 479
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gaagggctaagtcaccgaaatctatactgagaaaataacaccggagaatatatacaactg 680

                                                                
Query: 480 atgggatttttaaaggggaccaccgataacttgggatgattctaccttttaga 532
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 atgggatttttaaaggggaccaccgataacttggtatgattctaccttttaga 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space:   481806
Effective search space used:   481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)