BAC Information

Click to search

BAC

Clone NameMSMg01-504E17
Chromosome11 (Build37)
Map Location 57,951,347 - 57,951,770
singlet/doubletsinglet
Overlap geneGemin5
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8
Downstream geneMrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504E17.T7 (MSMg01no504_e17.b1)MSMg01-504E17.TJ (MSMg01no504_e17.g1)
ACCAG579208AG579209
length800806
length of high quality
(start - end)		643 (47 - 689)512 (82 - 593)
definitionCHROMAT_FILE: MSMg01no504_e17.b1 PHD_FILE: MSMg01no504_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:52 2005CHROMAT_FILE: MSMg01no504_e17.g1 PHD_FILE: MSMg01no504_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGTCTTCTTCAGCTACAAGGTGAAAGCCCCCAGCCGATATAA
AAATATGAGACCCTGTCTTAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAGGGGCTGGAGAGATGACTCAGCAGGTAAGAG
CGCTGGCTGCTCTTCCAGAGGACCAGGGTTCAGTTCCCAGAACCCATATA
AGTAGTTCACATGTTCACATCCATCTTTAACTCCAGCTCAGCAGAATTCC
GTGCTTTCTTCTGATCTCTGCAGGCACCACACATGCACACATGCAAGGGA
CACATACAAATATATCCAAACAAAACACCGATGATGATGGTGATGATGGT
GATGATGATGATGATTTAATACCAATACTTGAGAGGCAGAACTCACAAAA
GGTCTCTGCGAGTTCGAGGTCAGCCAAGGCTACACAAAGAAACCTTGTCT
GGAAAAAAAAATCAATAACTAGATTCACAAAACGCTATGGTTCCTAGATA
CATTTTCATCTTTTTGTTATTATTATTTTTTTAACTCATATTACAATGTA
GCCCAACCTGGCCTCAAATTCCCAGCAATCCTCCTGCCTCTGCCCTGTAG
ACCAAACTGTCTCTACTGAAGGCATACACCTGGCCTTAANGATTTTGTTT
GTTTGCTTTTAATTTTCCTACTTTATATTTCATTTTGAGGCAGGGTCTCT
AGCTAACCTGGAACTGTGTAGACCANGCTGTTCTCAAACCCAATCATCTA


NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGTAAATTAGGGTTTG
GTTTGGTTTTATTTTGTTTTGTTTAAATAGTCTCAGAGTGGATACTTTGA
GTAGCGCCCAGAGCCTTCACATGCTAGAAAGTCCTCCACCGTTGAGTCAC
ACACAGACATAATTGACTGTTTTTAAAGGATAGAGAGTGAGTACTGAATC
CTTTTGTGATAGGTCTCAGGGAAGTCTTCATTTTTATTTATTTATTTTTT
TAAGAGACCCTCCTGTTTCTGTCTGCTTAGCACTGGGATTAAAGGTGTGC
AATAGCTTGCCTGGCTTCTAGGGAAATCTTGGGACACACTGTTTAATTTG
GATTTCTTTCTTAAAGCAAAATTTTTAAGATATGTTGAATTTGCAATCCT
TGTTTAGTATTTTTCTCTCAAACCTTTGTTAACCCAAACTACAAAACGGT
ATTGTCTTGTTGGAATTTGCCCAAGCTGAGTTTTAAAGGCTTCAAACTTT
CTGTAAGTAGCAGGTCCCTTGGGTATAGTAATGAGTAAGGTGAATCAGAT
GTTGAGGCATGTATCAAGAAGTTACTAGCCATGTTAGCACTTCCTGCATT
GACTTTTTTCATTTTTAATTAGCAGAACTAAATGAAGATATGTCTGCCGA
CCTTGNAGAACGATTCCACTTGGGCCTTTTTACAGACAGGGCTACTCTAT
ACNGGATGATGGGAACAGAAAGGTAGACCTGCCCAGTCTTCTTATGCCTG
TCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_e17.g1 MSMg01no504_e17.g1 CHROMAT_FILE:
MSMg01no504_e17.g1 PHD_FILE: MSMg01no504_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:52 2005
         (512 letters)



>mm_chr11_57950859_57951770
          Length = 912

 Score =  766 bits (396), Expect = 0.0
 Identities = 417/424 (98%)
 Strand = Plus / Minus

                                                                       
Query: 89  catgctagaaagtcctccaccgttgagtcacacacagacataattgactgtttttaaagg 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 catgctagaaagtcctccaccgttgagtcacacacagacataattgactgtttttaaagg 853

                                                                       
Query: 149 atagagagtgagtactgaatccttttgtgataggtctcagggaagtcttcatttttattt 208
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 852 atagagagtgagtactgaatccttttgtgataggtctcagggaagccttcatttttattt 793

                                                                       
Query: 209 atttatttttttaagagaccctcctgtttctgtctgcttagcactgggattaaaggtgtg 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 atttatttttttaagagaccctcctgtttctgtctgcttagcactgggattaaaggtgtg 733

                                                                       
Query: 269 caatagcttgcctggcttctagggaaatcttgggacacactgtttaatttggatttcttt 328
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tagtagcttgcctggcttctagggaaatcttgggacacactgtttaatttggatttcttt 673

                                                                       
Query: 329 cttaaagcaaaatttttaagatatgttgaatttgcaatccttgtttagtatttttctctc 388
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 672 cttaaaacaaaatttttaagatatgttgaatttgcaatctttgtttagtatttttctctc 613

                                                                       
Query: 389 aaacctttgttaacccaaactacaaaacggtattgtcttgttggaatttgcccaagctga 448
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 612 aaacctttgttaacccaaactacaaaacggtattgtctcgttggaatttgcccaagctga 553

                                                                       
Query: 449 gttttaaaggcttcaaactttctgtaagtagcaggtcccttgggtatagtaatgagtaag 508
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 552 gttttaaaggcttcaaactttctgtaagtagcaggtctcttgggtatagtaatgagtaag 493

               
Query: 509 gtga 512
           ||||
Sbjct: 492 gtga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |