MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-505A19
Chromosome	11 (Build37)
Map Location	81,038,916 - 81,039,473
singlet/doublet	singlet
Overlap gene	Accn1
Upstream gene	Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene	1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rhot1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59040 MGI:1926078
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhbdl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246104 MGI:2179276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5730455P16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70591 MGI:1917841
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp207 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22680 MGI:1340045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043601 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	LOC100042726 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Psmd11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69077 MGI:1916327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdk5r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12569 MGI:101764
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338367 MGI:107728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem98 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103743 MGI:1923457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spaca3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75622 MGI:1922872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Accn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	1700071K01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5530401A14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71388 MGI:1918638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ccl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20296 MGI:98259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20306 MGI:99512
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20292 MGI:103576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20293 MGI:108224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20307 MGI:101878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20290 MGI:98258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhot1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626022 GeneID:59040 MGI:1926078
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ras homolog gene family, member T1 transcript_id : NM_021536.6

name	Rhbdl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328355 GeneID:246104 MGI:2179276
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : rhomboid, veinlet-like 3 (Drosophila) transcript_id : NM_139228.2

name	5730455P16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802550 GeneID:70591 MGI:1917841
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730455P16 gene transcript_id : NM_027472.2

name	Zfp207 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361088 GeneID:22680 MGI:1340045
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 207 transcript_id : NM_011751.2

name	LOC100043601 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262007 GeneID:100043601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs product : hypothetical protein LOC100043601 transcript_id : XM_001480944.1

name	LOC100042726 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261958 GeneID:100042726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to Discs, large homolog-associated protein 4 (Drosophila) transcript_id : XM_001478693.1

name	Psmd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053904 GeneID:69077 MGI:1916327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 transcript_id : NM_178616.3

name	Cdk5r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254597 GeneID:12569 MGI:101764
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase 5, regulatory subunit (p35) 1 transcript_id : NM_009871.2

name	Myo1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118026910 GeneID:338367 MGI:107728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin ID transcript_id : NM_177390.3

name	Tmem98 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22095006 GeneID:103743 MGI:1923457
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 98 transcript_id : NM_029537.1

name	Spaca3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626053 GeneID:75622 MGI:1922872
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm acrosome associated 3 transcript_id : NM_029367.1

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074519 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_001034013.2

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074520 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_007384.2

name	1700071K01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385139 GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700071K01 gene transcript_id : NM_001033765.2

name	5530401A14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390239 GeneID:71388 MGI:1918638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 5530401A14 gene transcript_id : XM_484055.3

name	Ccl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803162 GeneID:20296 MGI:98259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 2 transcript_id : NM_011333.3

name	Ccl7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476054 GeneID:20306 MGI:99512
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 7 transcript_id : NM_013654.2

name	Ccl11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802451 GeneID:20292 MGI:103576
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small chemokine (C-C motif) ligand 11 transcript_id : NM_011330.2

name	Ccl12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226205 GeneID:20293 MGI:108224
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 12 transcript_id : NM_011331.2

name	Ccl8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803310 GeneID:20307 MGI:101878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 8 transcript_id : NM_021443.2

name	Ccl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387472 GeneID:20290 MGI:98258
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 1 transcript_id : NM_011329.2

name	Rhot1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559891 CCDS:CCDS25130.1 GeneID:59040 MGI:1926078
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0031307 - integral to mitochondrial outer membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence ISS]; GO:0019725 - cell homeostasis [Evidence ISS]; GO:0047497 - mitochondrion transport along microtubule [Evidence ISS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : mitochondrial Rho 1 protein_id : NP_067511.4

name	Rhbdl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21218408 CCDS:CCDS25131.1 GeneID:246104 MGI:2179276
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] codon_start : 1 note : rhomboid like gene 4; rhomboid related gene 1 product : rhomboid, veinlet-like 4 protein_id : NP_631974.1

name	5730455P16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625765 CCDS:CCDS25132.1 GeneID:70591 MGI:1917841
definition	GO_process : GO:0007283 - spermatogenesis [Evidence ISS] codon_start : 1 product : protein kinase Njmu-R1 protein_id : NP_081748.1

name	Zfp207 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6756051 GeneID:22680 MGI:1340045
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : zinc finger protein 207 protein_id : NP_035881.1

name	LOC100043601 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262008 GeneID:100043601
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480994.1

name	LOC100042726 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261959 GeneID:100042726
definition	codon_start : 1 product : similar to Discs, large homolog-associated protein 4 (Drosophila) protein_id : XP_001478743.1

name	Psmd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053905 CCDS:CCDS25133.1 GeneID:69077 MGI:1916327
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : proteasome 26S non-ATPase subunit 11 protein_id : NP_848731.2

name	Cdk5r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753384 CCDS:CCDS25134.1 GeneID:12569 MGI:101764
definition	GO_component : GO:0030424 - axon [Evidence ISS]; GO:0043025 - cell soma [Evidence ISS]; GO:0043292 - contractile fiber [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0043197 - dendritic spine [Evidence ISS]; GO:0030426 - growth cone [Evidence ISS]; GO:0016020 - membrane [Evidence ISS]; GO:0005624 - membrane fraction [Evidence TAS] [Evidence IDA]; GO:0031594 - neuromuscular junction [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0045296 - cadherin binding [Evidence ISS]; GO:0005509 - calcium ion binding [Evidence ISS]; GO:0016534 - cyclin-dependent protein kinase 5 activator activity [Evidence TAS]; GO:0008092 - cytoskeletal protein binding [Evidence TAS]; GO:0016301 - kinase activity [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0043539 - protein serine/threonine kinase activator activity [Evidence ISS] GO_process : GO:0007213 - acetylcholine receptor signaling, muscarinic pathway [Evidence ISS]; GO:0048675 - axon extension [Evidence ISS]; GO:0007411 - axon guidance [Evidence IMP]; GO:0007413 - axonal fasciculation [Evidence IMP]; GO:0007420 - brain development [Evidence IMP]; GO:0009790 - embryonic development [Evidence ISS]; GO:0035235 - ionotropic glutamate receptor signaling pathway [Evidence ISS]; GO:0031175 - neurite development [Evidence ISS]; GO:0007158 - neuron adhesion [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence ISS]; GO:0001764 - neuron migration [Evidence IDA]; GO:0043525 - positive regulation of neuron apoptosis [Evidence ISS] codon_start : 1 product : cyclin-dependent kinase 5, regulatory subunit (p35) 1 protein_id : NP_034001.1

name	Myo1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118026911 GeneID:338367 MGI:107728
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : molecular motor product : myosin ID protein_id : NP_796364.2

name	Tmem98 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22095007 CCDS:CCDS25135.1 GeneID:103743 MGI:1923457
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC103743 protein_id : NP_083813.1

name	Spaca3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626054 CCDS:CCDS25136.1 GeneID:75622 MGI:1922872
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0003796 - lysozyme activity [Evidence IEA] GO_process : GO:0016998 - cell wall catabolism [Evidence IEA]; GO:0035036 - sperm-egg recognition [Evidence IMP] codon_start : 1 note : acrosomal sperm protein; sperm lysozyme-like protein 1 precusor; sperm c-type lysozyme-like protein product : lysozyme-like protein 3 protein_id : NP_083643.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77404288 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform b protein_id : NP_001029185.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680622 CCDS:CCDS25137.1 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform a protein_id : NP_031410.1

name	1700071K01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702063 GeneID:237880 MGI:3588264
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC237880 protein_id : NP_001028937.1

name	5530401A14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51828598 GeneID:71388 MGI:1918638
definition	codon_start : 1 product : hypothetical protein LOC71388 protein_id : XP_484055.1

name	Ccl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755430 CCDS:CCDS25139.1 GeneID:20296 MGI:98259
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0001664 - G-protein-coupled receptor binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A2; monocyte chemotactic protein; monocyte chemoattractant protein-1 product : chemokine (C-C motif) ligand 2 protein_id : NP_035463.1

name	Ccl7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305463 GeneID:20306 MGI:99512
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A7; RANTES/sis homolog product : chemokine (C-C motif) ligand 7 protein_id : NP_038682.1

name	Ccl11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755418 GeneID:20292 MGI:103576
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A11 product : small chemokine (C-C motif) ligand 11 protein_id : NP_035460.1

name	Ccl12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226206 GeneID:20293 MGI:108224
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : putative; small inducible cytokine A12 (MGD\|MGI:108224) product : chemokine (C-C motif) ligand 12 protein_id : NP_035461.2

name	Ccl8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946818 GeneID:20307 MGI:101878
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A8; monocyte chemoattractant protein-2 product : chemokine (C-C motif) ligand 8 protein_id : NP_067418.1

name	Ccl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755424 GeneID:20290 MGI:98258
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A1; CCR8 ligand product : chemokine (C-C motif) ligand 1 protein_id : NP_035459.1

clone name	MSMg01-544O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452P18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-535A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432P07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-261N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218M06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-505A19.T7 (MSMg01no505_a19.b1)	MSMg01-505A19.TJ (MSMg01no505_a19.g1)
ACC	AG579782	AG579783
length	771	1,092
length of high quality (start - end)	703 (69 - 771)	---
definition	CHROMAT_FILE: MSMg01no505_a19.b1 PHD_FILE: MSMg01no505_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:52 2005	CHROMAT_FILE: MSMg01no505_a19.g1 PHD_FILE: MSMg01no505_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:52 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG AATTCTTCTCTCTCCCCGTCCCTAGGAGGTAAGTTCTGGGTAAGACTCCA TCTGGCCACAAGTGATAAATATATTTCTGCTCGGGAGAAAACAAGCAGCC ATAGATCTTCTGTATGGGAAGTAGTTTCCTTCTATTTCAAACCACACCAA ATGGAGCCCAACCAACGAGCCAGTGTGAGAAAAGAGACCAAGGCAGGATT GTAAAATGACTGAGGCTAAAGGTTTTGTTTAATAAAACCTGAAACATAAA AGTACTAAAAGTGGGTTAGTGCCATGTGCTTTTTGAAAAGAAAAATGGCA TCTTAGAAAATTTGAAGGAATGCATAATGAAAAGTTTGAGGGGCTTGCTG CTGCTCATGGTGATGCTGCTACTGTTGCTGTTCAGAGGGGAGAAGTGGAC TGGGCAAGGGACTTCCTATAGGGAGACAACTGTATGTGCTGTCATGTACA GCTATTCATGGAGGCCATGCTGCAGACGAGGGCAAGAGGGCCTGGCTTCC CATCATTTCCCATGCACCACTTGAAGGCTGTCTAGTCATTCGGCTCTGTT TTACCATCACTGCTATGCCTATGATATGGCTAGGCTATATGAATCCCAGC ATTTATTTTAAATTGACTCGCTTTTTAAATAGAAATACCAACCTGAGTTT TGGCCCTATAATAACAGCTTAGAAGCTTCTGGCTATATTTTCCTGACTAT ACATTACAATAAATATATAAN	CCATTTGCTANNNNNNNANNNCCCTGGNNCGGCCGCCCTGTTTTCCACAA CAAGGGANNGNGAACACNANAAGAAATTTATCCGCAGAAANNTCTTNNTC CTTCTGAANGNCAAANNGGCANGGGGCAAAGNCCCAATGGCTCCTTGGGT CACTGGAAACTCANNCAATTGNAANTGGGAAAGGGCTTTAACTTNGCTTC ACCNANGAAACAAGAAAATATAAANTAAAAAAGGCATTGCCCCATCANAA AAAGGAAGGATGTAAAAAACTGGCCTTTTGTTTCATTGGNAAAATTACCC CATCTTTTGGGGGAAAAACCCCCCAAAAANTTTAAAAAACCNNCCCTTTC AAAAATGTTCCGGGGCAAAATCCCTNTCTCCCCTNTAAAGTAACCCAAAA AATTTNNNNAAAAAAAAAGTGTTTNNNNTTAAAAATGAAAAGGTGNNCTN NNNCTCTGGGGGGGGGGGGGTGTGGTGTGTGAGGGTGGGTGGTGATTGTG TTGGGGTGTTTGGGGGGGGGGGGGCTGGGGGGGGGGGGGGGGGGGGGGGG GNNCCTTNNNNNNNNNNNNNNNNNNNNNNNNNGNGGGGGGGGTGGGGGGG TGGCTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN GNNNNNNNNTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNGGGGGGGGGGGGGTCCCCNNNNNNNNNNNNNNNNNNNNNNNGGNNNN NNNNNNNNNNNNNNGGTGGTGTTTTTGTTNNNNNNCCTTTTNNNNNNNNN NNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGTCTTTTNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNGNGNGNGGGGGGGGGGGGGGGGGGNNN CCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNGGNGNTGTGTTGTGTTGTTTGTTA
quality values	Open. Hide. 13 13 13 13 12 11 14 14 16 23 21 30 24 23 16 16 23 19 14 9 9 9 23 23 41 28 22 20 15 13 7 9 7 11 8 9 10 10 14 14 12 11 10 10 10 10 15 30 31 23 19 19 22 29 29 59 30 30 12 12 9 9 9 12 12 17 20 20 20 20 28 32 31 30 28 37 34 57 57 57 50 50 53 53 43 47 57 57 57 57 59 59 59 57 68 68 53 68 68 68 68 68 59 68 50 50 47 48 48 50 50 51 53 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 43 43 31 31 31 31 31 35 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 57 68 57 57 57 57 57 59 59 59 59 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 57 57 57 57 59 57 57 57 68 68 68 59 59 54 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 68 68 68 68 59 59 59 57 57 57 57 57 57 57 53 53 50 50 50 57 57 57 57 48 48 59 59 59 59 59 59 44 39 39 37 37 39 41 59 59 47 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 48 48 48 48 47 54 54 57 59 59 59 59 59 59 59 59 59 59 48 57 57 59 59 43 43 43 43 43 48 48 48 48 48 48 47 47 47 47 47 59 44 37 37 44 41 40 39 36 36 39 59 59 59 48 48 48 57 57 48 48 48 48 48 48 57 48 48 48 48 48 48 48 57 36 36 33 33 33 29 33 28 34 32 32 28 36 32 27 25 30 30 30 31 32 37 30 30 25 31 37 32 27 25 25 25 27 34 37 32 26 29 32 36 37 32 35 35 39 30 29 12 12 12 24 24 31 37 39 41 34 29 24 28 25 28 28 32 26 27 31 30 30 29 32 37 37 39 28 32 20 28 20 25 25 32 32 28 22 22 30 34 36 31 33 33 30 24 20 12 3 0	Open. Hide. 19 19 19 19 10 10 8 10 6 3 0 0 0 0 0 0 0 3 0 0 0 3 11 7 7 7 3 0 0 3 8 8 15 9 9 9 7 7 6 9 10 17 17 10 9 9 9 9 10 6 6 7 7 7 7 11 3 0 0 3 0 3 8 11 8 17 3 0 3 0 3 8 17 8 8 8 8 10 8 9 8 9 9 9 9 9 9 9 13 3 0 0 3 14 14 3 0 0 3 14 15 39 41 37 21 17 6 3 0 3 0 3 17 8 3 0 0 3 14 14 3 0 3 7 7 9 24 21 11 11 3 0 3 7 7 11 11 12 12 12 12 12 12 15 9 9 9 9 9 9 16 37 33 32 18 9 9 9 9 9 17 12 3 0 0 3 9 8 15 17 3 0 3 3 0 3 8 8 12 12 12 12 9 9 37 23 19 12 9 9 9 7 7 3 0 3 8 8 11 9 8 9 3 0 3 0 3 7 7 7 8 7 8 17 15 15 17 17 24 24 30 7 7 3 0 3 7 11 17 17 15 15 14 14 16 13 10 9 8 8 8 8 7 7 9 12 3 0 3 8 8 7 15 9 9 9 16 16 13 11 11 13 14 12 17 17 11 13 15 8 8 8 9 8 8 9 9 12 17 18 22 11 11 10 10 7 7 8 3 0 3 16 16 10 9 8 8 9 8 8 6 6 8 8 8 8 13 15 28 34 21 12 12 12 12 12 9 8 8 12 23 10 7 7 6 10 6 9 3 0 3 16 16 32 32 23 25 14 10 10 3 0 0 3 11 11 19 10 8 8 6 6 8 9 8 8 10 8 8 9 9 9 11 8 8 8 8 8 8 9 7 9 9 9 3 0 3 6 6 6 6 8 8 3 0 3 6 7 6 6 7 7 8 8 8 8 8 10 8 8 6 7 9 9 3 0 0 0 0 3 8 6 7 7 9 8 9 6 6 6 8 8 10 3 0 0 0 0 3 6 3 6 6 7 6 6 6 6 8 8 8 7 8 8 3 0 0 3 3 0 0 0 0 3 10 8 19 16 26 32 32 32 32 32 26 19 20 15 10 10 10 8 8 8 8 8 6 6 6 6 6 6 6 6 6 7 6 6 6 6 6 6 12 9 9 9 10 6 8 6 6 6 6 11 11 10 12 9 9 9 9 9 10 12 22 22 23 39 21 21 21 12 9 8 8 8 9 15 23 23 12 12 10 19 19 17 8 8 8 8 8 17 15 17 17 17 17 17 13 13 3 0 0 3 6 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 6 6 6 6 6 8 6 6 7 6 6 6 8 10 10 8 9 10 13 13 11 12 12 11 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 3 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 7 9 9 9 9 9 9 6 8 6 6 3 6 6 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 6 6 6 6 6 6 7 8 11 8 8 8 3 0 0 0 0 0 0 3 7 7 7 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 10 8 8 8 8 11 9 18 10 15 6 6 8 9 14 11 11 10 10 10 8 8 6 7 7 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 0 3 0 3 8 8 8 8 8 9 10 11 11 8 8 8 17 16 9 9 3 0 0 0 3 7 7 7 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 3 0 3 6 6 6 6 6 6 10 8 8 6 6 8 7 8 8 8 8 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no505_a19.b1 MSMg01no505_a19.b1 CHROMAT_FILE:
MSMg01no505_a19.b1 PHD_FILE: MSMg01no505_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:52 2005
         (703 letters)



>mm_chr11_81038371_81039473
          Length = 1103

 Score = 1025 bits (530), Expect = 0.0
 Identities = 556/576 (96%), Gaps = 18/576 (3%)
 Strand = Plus / Minus

                                                                        
Query: 127  caccaaatggagcccaaccaacgagccagtgtgagaaaagagaccaaggcaggattgtaa 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 caccaaatggagcccaaccaacgagccagtgtgagaaaagagaccaaggcaggattgtaa 1044

                                                                        
Query: 187  aatgactgaggctaaaggttttgtttaataaaacctgaaacataaaagtactaaaagtgg 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 aatgactgaggctaaaggttttgtttaataaaacctgaaacataaaagtactaaaagtgg 984

                                                                        
Query: 247  gttagtgccatgtgctttttgaaaagaaaaatggcatcttagaaaatttgaaggaatgca 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  gttagtgccatgtgctttttgaaaagaaaaatggcatcttagaaaatttgaaggaatgca 924

                                                                        
Query: 307  taatgaaaagtttgaggggcttgctgctgctcatggtgatgctgctactgttgctgttca 366
            ||| |||||||||||||||||                  |||||||||||||||||||||
Sbjct: 923  taaggaaaagtttgaggggct------------------tgctgctactgttgctgttca 882

                                                                        
Query: 367  gaggggagaagtggactgggcaagggacttcctatagggagacaactgtatgtgctgtca 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881  gaggggagaagtggactgggcaagggacttcctatagggagacaactgtatgtgctgtca 822

                                                                        
Query: 427  tgtacagctattcatggaggccatgctgcagacgagggcaagagggcctggcttcccatc 486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821  tgtacagctattcatggaggccatgctgcagacgagggcaagagggcctggcttcccatc 762

                                                                        
Query: 487  atttcccatgcaccacttgaaggctgtctagtcattcggctctgttttaccatcactgct 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761  atttcccatgcaccacttgaaggctgtctagtcattcggctctgttttaccatcactgct 702

                                                                        
Query: 547  atgcctatgatatggctaggctatatgaatcccagcatttattttaaattgactcgcttt 606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  atgcctatgatatggctaggctatatgaatcccagcatttattttaaattgactcgcttt 642

                                                                        
Query: 607  ttaaatagaaataccaacctgagttttggccctataataacagcttagaagcttctggct 666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641  ttaaatagaaataccaacctgagttttggccctataataacagcttagaagcttctggct 582

                                                
Query: 667  atattttcctgactatacattacaataaatatataa 702
            |||||||| |||||||||||||||||||||||||||
Sbjct: 581  atattttcttgactatacattacaataaatatataa 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information