Query= MSMg01no505_m19.b1 MSMg01no505_m19.b1 CHROMAT_FILE:
MSMg01no505_m19.b1 PHD_FILE: MSMg01no505_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:47 2005
(605 letters)
>mm_chr11_119952038_119953042
Length = 1005
Score = 1137 bits (588), Expect = 0.0
Identities = 599/606 (98%), Gaps = 7/606 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaagttttcca----atcattgccagcacctagcaatgggacaggtccaactgg 59
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaagt---ccatacaatcattgccagcacctagcaatgggacaggtccaactgg 259
Query: 60 gactgaggtagcctgggagttgggggtgggagttgtagtcagtgttcagcctcctaggga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gactgaggtagcctgggagttgggggtgggagttgtagtcagtgttcagcctcctaggga 319
Query: 120 cagagcagcatggggcggaggggctgtggtcgacagccctggggacgtcctgccctgcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagagcagcatggggcggaggggctgtggtcgacagccctggggacgtcctgccctgcag 379
Query: 180 atgtacaaggtggtctccagctatggacagaccgctaagaaggtctgtgtgggtcttgct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgtacaaggtggtctccagctatggacagaccgctaagaaggtctgtgtgggtcttgct 439
Query: 240 gggaggaagagagaagccagtctcagagtcaattcccaagaagcaatgggtgtgcggaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggaggaagagagaagccagtctcagagtcaattcccaagaagcaatgggtgtgcggaca 499
Query: 300 tcttctgaggcaccagttgactgtattttccacacctccatgttggctggtcagcactaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttctgaggcaccagttgactgtattttccacacctccatgttggctggtcagcactaa 559
Query: 360 gggcccagatcccttcttcagtgactgttctgagcactgggaggcccatccagggctcac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggcccagatcccttcttcagtgactgttctgagcactgggaggcccatccagggctcac 619
Query: 420 ctggctcaaaggccgctgtaccagtttcctagttgaaaggaaggggccagagggcgaagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctggctcaaaggccgctgtaccagtttcctagttgaaaggaaggggccagagggcgaagg 679
Query: 480 gacagccagaggacaccaaaggatggctccttggtgaacacgaggacaggagaccataag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gacagccagaggacaccaaaggatggctccttggtgaacacgaggacaggagaccataag 739
Query: 540 gtcctggggccttttatatgaggaccagaggggacgctgtacagctgggcccagaaagtc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtcctggggccttttatatgaggaccagaggggacgctgtacagctgggcccagaaagtc 799
Query: 600 acatgt 605
||||||
Sbjct: 800 acatgt 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_m19.g1 MSMg01no505_m19.g1 CHROMAT_FILE:
MSMg01no505_m19.g1 PHD_FILE: MSMg01no505_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:47 2005
(616 letters)
>mm_chr11_120130863_120131878
Length = 1016
Score = 1127 bits (583), Expect = 0.0
Identities = 609/619 (98%), Gaps = 6/619 (0%)
Strand = Plus / Minus
Query: 1 accctgtagaccaggctggcctcgaactcagagatctgcctgcctctgcctcccgagtgc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 909 accctgtagaccaggctggcctcgaacacagagatctgcctgcctctgcctcccgagtgc 850
Query: 61 tgggattaaaggcatgcgccaccacgcctggctggtgtggacattcttaggagtccccag 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tgggattaaaggcgtgcgccaccacgcctggctggtgtggacattcttaggagtccccag 790
Query: 121 aatgcaccatcttacctgacttatttcaggctaataaggctggaaagaatactctctgct 180
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 789 aatgcaccatcttacctgacttatttcaggctaataaggctggaaataata--ctctgct 732
Query: 181 gagaaacaactgtattgttgcatcttaaccctggcagctgtgggaccctcagcttgggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gagaaacaactgtattgttgcatcttaaccctggcagctgtgggaccctcagcttgggga 672
Query: 241 gggggttcctaagaataggctgtccaaccgggggccctggatct-ggagcaaaccctttg 299
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 671 gggggttcctaagaataggctgtccaaccgggggccctggatctggga-caaaccctttg 613
Query: 300 tacccaggaagggtcagctccaggctgttatcagtaagctctagggacatccactctttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tacccaggaagggtcagctccaggctgttatcagtaagctctagggacatccactctttg 553
Query: 360 ccagccaagctggagccacattagacctctggcaga--ctgggggcccgccctgcctccc 417
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 552 ccagccaagctggagccacattagacctctggcagactctgggggcccgccctgcctccc 493
Query: 418 cccgggtgggtgggcactagggcactaggcagggaaacaaaagaaaacatttgcaacttg 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccggggtgggtgggcactagggcactaggcagggaaacaaaagaaaacatttgcaacttg 433
Query: 478 taaaactgtcctcagtcatgtaaattccttgtcaacttcttctaattagaaaccaggggg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaaactgtcctcagtcatgtaaattccttgtcaacttcttctaattagaaaccaggggg 373
Query: 538 aaggggagcaggaaggggtagcccgggagaggcccaattagcttaatttcccaaaccaaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaggggagcaggaaggggtagcccgggagaggcccaattagcttaatttcccaaaccaaa 313
Query: 598 taatgttcttggacgaagc 616
|||||||||||||||||||
Sbjct: 312 taatgttcttggacgaagc 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
