BAC Information

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BAC

Clone NameMSMg01-507F12
Chromosome11 (Build37)
Map Location 64,295,900 - 64,354,468
singlet/doubletdoublet
Overlap geneHs3st3a1
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507F12.T7 (MSMg01no507_f12.b1)MSMg01-507F12.TJ (MSMg01no507_f12.g1)
ACCAG581518AG581519
length792789
length of high quality
(start - end)		636 (44 - 679)489 (76 - 564)
definitionCHROMAT_FILE: MSMg01no507_f12.b1 PHD_FILE: MSMg01no507_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:51 2005CHROMAT_FILE: MSMg01no507_f12.g1 PHD_FILE: MSMg01no507_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,295,900 - 64,296,530)(64,353,982 - 64,354,468)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGA
ATTCCCAATGCGATCTCAGAAAGAGGAAGTTATCCTGCTCAGTGTTAAAC
ACATAGGGACACAAAGCACTAGAACATTAAAGATTGTCACCCAAGGACAT
TGTGATGAGTTATGACAGCAAAGTCAATTAAAAATAAAAACCCTCCTTTT
TCTTATGAAAATGCATATTTAATTCATCCTGAGGAACTAGCTTTCCTTGA
CATAAATGCTATCGCTCTGAGTCTTCTTTAAGTCTCAACCAAGTTGAATG
GAGAGAATTTAGATTCATTTACTAAGTTCAAACTAGAGAACAGTAGCCAT
GATCTCCTTATACTCCCACAATGTCAAATTTGAAACCTTGCCAAGTAATC
TAATCCTATATAGTTGGCGGTGACTTTAAAATCAAATGGACAGTAACACT
TGTACATAAGAATTCCGAAGAGTCCTTTAGACTCCTAGAAGCTCAATGAG
AAAATACTCCATTGTCTATAAATGAAAATGTGGCTGGCATGTTTCCTTTC
CTGAGACACTTAGAATCCAAGGTCTCTTCTGATTTGAAGAAGTAGCATAA
ATAACAGAGAAAGAAATTGCATGGGCTCAAACTCCTATGCAAGTTTAATA
TCTCGGCCACAGACCAACTAGTTGGGTTCAGACTCCAACAAATTTAAAAT
AAGGATGGAGGGGNCACTATGAGGCAACATCAAAAGCAAAGGGCGTTATT
TGCACTGCTCANCCTTTGANGTAAACGTTTGGGGGAAGATGN

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCATTTACCCGAATGAGCTCCTGA
TCAGCTTCTTCCACAGAAGAACCTCCAGGAGCAGATGCAGCCTGGTTAAC
TTCAGGTTGGCAGACTCCAATCAGAAGACAGAGGGAAGCTATCCTTGGAT
GACTGGCCTGTAGAGACTGTGAGGTAATAAGTCTGTGGGAAGTTTATCTC
TAGTAATACATGAGACAAACACTAACTTCAAATGACAGCAATAAATATCT
CTGGCCAGTCCGTGTAGCTCAGTAAATACTCCATTACTACTCTGGATTGA
CTCCCAACCCCTGCAAGCTGAGTCACAATTCAAATTCCACACATGGAAAC
TCGAGATTATTTGGAAAATAGGACTTTGCAAATGAAATCAAGTTAAGATG
CTATGTTCATTAGCTGTACATCAACTTGACAAAAGCTTTAATCATCTGAG
GGGAGGAAACCGTAACTGAGAAAATGCCACCATAAGGTGGAACGGTAGGA
CATTTTCTTAATGGGANGGAGTATTTGGGAGGNNCNNNNNNNNTGNGNNN
NNGNNNNNNNNNNGNNNTGNNNNNNNNNNNNNNNTNTNNNNNNNNNNNNN
TGNNNNNNTTTTGTTTTTTTTTTTTGTTNTTTGGTTTTTTTTGTTTTTGT
GTGTGTTGGTTTTTGTTTTTTGTTTTGGGNNTGTTTTNTTNNTTGGGTGT
NGTNTTTTTGGGGTGGNTTTTTTGTTTTTTTGGNGNNNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_f12.b1 MSMg01no507_f12.b1 CHROMAT_FILE:
MSMg01no507_f12.b1 PHD_FILE: MSMg01no507_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:51 2005
         (636 letters)



>mm_chr11_64295695_64296730
          Length = 1036

 Score = 1143 bits (591), Expect = 0.0
 Identities = 621/631 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcccaatgcgatctcagaaagaggaagttatcctgctcagtgttaaacacataggg 65
           |||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 gaattcccaatgtgagctcagaaagaggaagttatcctgctcactgttaaacacataggg 265

                                                                       
Query: 66  acacaaagcactagaacattaaagattgtcacccaaggacattgtgatgagttatgacag 125
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acacaaagcactagaatattaaagattgtcacccaaggacattgtgatgagttatgacag 325

                                                                       
Query: 126 caaagtcaattaaaaataaaaaccctcctttttcttatgaaaatgcatatttaattcatc 185
            ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 326 taaagtcaattaaaaataaaaacccttctttttcttatgaaaaggcatatttaattcatc 385

                                                                       
Query: 186 ctgaggaactagctttccttgacataaatgctatcgctctgagtcttctttaagtctcaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgaggaactagctttccttgacataaatgctatcgctctgagtcttctttaagtctcaa 445

                                                                       
Query: 246 ccaagttgaatggagagaatttagattcatttactaagttcaaactagagaacagtagcc 305
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 ccaagttgaatggagagaatttagattcatttactaagttcaaactagagaacagtggcc 505

                                                                       
Query: 306 atgatctccttatactcccacaatgtcaaatttgaaaccttgccaagtaatctaatccta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atgatctccttatactcccacaatgtcaaatttgaaaccttgccaagtaatctaatccta 565

                                                                       
Query: 366 tatagttggcggtgactttaaaatcaaatggacagtaacacttgtacataagaattccga 425
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 tatagttggtggtgactttaaaatcaaatggacagtaacacttgtacataagaattctga 625

                                                                       
Query: 426 agagtcctttagactcctagaagctcaatgagaaaatactccattgtctataaatgaaaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agagtcctttagactcctagaagctcaatgagaaaatactccattgtctataaatgaaaa 685

                                                                       
Query: 486 tgtggctggcatgtttcctttcctgagacacttagaatccaaggtctcttctgatttgaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tgtggctggcatgtttcctttcctgagacacttagaatccaaggtctcttctgatttgaa 745

                                                                       
Query: 546 gaagtagcataaataacagagaaagaaattgcatgggctcaaactcctatgcaagtttaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaagtagcataaataacagagaaagaaattgcatgggctcaaactcctatgcaagtttaa 805

                                          
Query: 606 tatctcggccacagaccaactagttgggttc 636
           |||||||||||||||||||||||||||||||
Sbjct: 806 tatctcggccacagaccaactagttgggttc 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_f12.g1 MSMg01no507_f12.g1 CHROMAT_FILE:
MSMg01no507_f12.g1 PHD_FILE: MSMg01no507_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:51 2005
         (489 letters)



>mm_chr11_64353731_64354619
          Length = 889

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatttacccgaatgagctcctgatcagcttcttccacagaagaacctccaggagcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgcatttacccgaatgagctcctgatcagcttcttccacagaagaacctccaggagcaga 679

                                                                       
Query: 61  tgcagcctggttaacttcaggttggcagactccaatcagaagacagagggaagctatcct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 678 tgcagcctggttaacttcaggttggcagactccaatcagaagacagagggaagctagcct 619

                                                                       
Query: 121 tggatgactggcctgtagagactgtgaggtaataagtctgtgggaagtttatctctagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 618 tggatgactggcctgtagagactgtgaggtaataagtctgtgggaagtttatctccagta 559

                                                                       
Query: 181 atacatgagacaaacactaacttcaaatgacagcaataaatatctctggccagtccgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atacatgagacaaacactaacttcaaatgacagcaataaatatctctggccagtccgtgt 499

                                                                       
Query: 241 agctcagtaaatactccattactactctggattgactcccaacccctgcaagctgagtca 300
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 498 agctcagtaaatactccagtactgctctggattgactcccaacccctgcaagctgagtca 439

                                                                       
Query: 301 caattcaaattccacacatggaaactcgagattatttggaaaataggactttgcaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caattcaaattccacacatggaaactcgagattatttggaaaataggactttgcaaatga 379

                                                                       
Query: 361 aatcaagttaagatgctatgttcattagctgtacatcaacttgacaaaagctttaatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatcaagttaagatgctatgttcattagctgtacatcaacttgacaaaagctttaatcat 319

                                                                       
Query: 421 ctgaggggaggaaaccgtaactgagaaaatgccaccataaggtggaacggtaggacattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctgaggggaggaaaccgtaactgagaaaatgccaccataaggtggaacggtaggacattt 259

                  
Query: 481 tcttaat 487
           |||||||
Sbjct: 258 tcttaat 252


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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