BAC Information

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BAC

Clone NameMSMg01-507L13
Chromosome11 (Build37)
Map Location 24,906,197 - 24,906,838
singlet/doubletsinglet
Overlap genenone
Upstream geneA830031A19Rik, LOC100042256, Bcl11a, LOC100042282
Downstream gene5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507L13.T7 (MSMg01no507_l13.b1)MSMg01-507L13.TJ (MSMg01no507_l13.g1)
ACCAG581803AG581804
length1,521758
length of high quality
(start - end)
---642 (76 - 717)
definitionCHROMAT_FILE: MSMg01no507_l13.b1 PHD_FILE: MSMg01no507_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:21 2005CHROMAT_FILE: MSMg01no507_l13.g1 PHD_FILE: MSMg01no507_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCTGTTTGTGCTGTGTGGCGGGCGNGCNCGCGTTGGCGTGGCTGACGC
GAGCTCTCCCTCTCCTAATACGCGTCGAGCCGCGTGCACACTTGCTCGAC
TTCTCTCCTCACTCAACACGGACCGTCGCCGCAGCGCTGCCGCACTATGC
GCGACCTCGTTATCGTGTAGACGATCGTGCTCACACCGCCACAGCTGTCT
CTATGGGAGCTGGAGCCTTCGCGCTATGCCGTATCGACGACACGNTCGGG
TGCTCAGTAGAGCAGTGAGTGTGGCCTGAGTCAGTCGCGCACGTGCCACG
GAGACCACCGCGATACTATCCAATATTACATAAACGTACACGATGTCCCT
TACCGACGTGTCCTCGCTAATTCTCTCGCATCTCCACCTCGCTCCGCCGC
TTGTGACCAGCCGAATCGAATCGATGTAATAGCGCCTGAAGATACTACGC
GAGATACGCGGCATATGAGTCTCAGATTGCGTTACCAGCGCCTCAGCAGA
CCACGATATCCTGTACAAATACATGCGATCATATAGACCAGAAANNAGAA
GATGTGAGAACGATTGATGTCGATAGGCGGAGCTGTGATGACCCGGAGGT
ATAGGATGAGAGTGTATAGTATACATGTTCATATATATCTGAACTGGTCA
CATAATCTCATACATTACCGTGCACTGAGTCTTGTGCTGTAGAGCAGGGA
TGTGATGTGTTGTGTGCGGATAGTGCCCGCGTGAGGATGTCGACGGTTGC
ACGCGTCACTGAGTTAACTCGCGTCCTGTGAATGTATTACCCGTCGCACG
CCGACGGCGCATGCCGAGATTGATATACCGTGCGTACGATAGCTCAGTAC
CGCAGGTGATATANATGAGCGCGATTGCAGTGCGTGACGCTCATCGATTC
TTATCATTTATGCAACGCGCCGGAGNGTCTGTGTGGATCAATCTACCTTA
CCNTGCGCGCGCATCGACACGGTCATAACTGTGATCTGTGAGTGTATTCT
CTATGACGTGCGACGACACGCGCCGTGACGCGCGCGCGCTCGTGGTGATG
TAGTCCCTAGTCGTGATAGTGGCTCTTAGCTGCTCGCATCACATGCGCAC
ACGTGTATCGGCTCATGACACAGCTGGCGTCGCGCGCCGTACTAACCACT
TGGCTGCGTACACGGTNACCTGATCGTCNGCTACNATCCTACGACAGCGA
CTAATAGGATCATCTATCTTGTATCTCTATCGCGTGTAGTGATGTCTAGT
CANGCTGAGACGCAGTCGCTGCGTACATCNCAATCAAGTCGCTGCTGTCA
CACATCGCCTNATATTGTCTCAGTCATCTACATCACAGATTACTGACATG
TACATACATGTCGGTACACGAGCTCCTCACGCACATACCGACTATCACTA
TGACGACGTGAGTCGCGAGTANATCATAAACACGCACTTTTTTATCGTCT
CTCACCGCTNATCTCGTGNACTATCGACTCTCCATCTATGCTACATAGTC
ATTCGCACATGCGACGCGATN
NACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGACACTTTCCTTTGTAGACAATTA
GAGAAAGCAATTTCCCCCCATGAGATTCCTAAGATCAAATATAAATCCTA
CAAGGTTAACATAAAGAAAGGCATCCTCTGACACTTTCCATCAGAATACC
CACCAATTCCCTATCTTTGATATTGACTATCCCATTTTTAATAAAGTTCC
TCAATTATAGCCCTTCCTACTCCAGTTAGTTGTTATCCTTCACACAGCTT
TACCAGATCTGTCCTTTATTTTGATTTTGTGTATATTGAGTCTTTTTAGA
TTTACAGTAAGGAATGAAGAAGGAAGGAGTCCGGTTTTTAATATGCCAAA
TCTTGCTCAATTCTGAAATATTTAATGAAAGTTCTTTAATTTGTTATTTT
GAGGTATTACCCTTGGATTAAATCTAGAGAAAAATATATAAATTTGAAGA
ATGCAATGGAAAACATTTTTACTAAGAGATACACCCCTGAGATATATCCA
TGAGACCACCTCTCAAATCAATGCACAGGGAGATTTGCTGATTCATGTCC
ACATAACTTTCTCCCTATGAAATATCAACTGTGTTACGTTTTCTATGGTA
AATACCTTTATTATCTAATGATGAATTAATTTACTTTTATTACATAATTT
TGAATTAATTTACTTGTTAAATGTGTACAATTTGTTCATATTTATTCACC
TCAAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_l13.g1 MSMg01no507_l13.g1 CHROMAT_FILE:
MSMg01no507_l13.g1 PHD_FILE: MSMg01no507_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:22 2005
         (642 letters)



>mm_chr11_24905997_24907038
          Length = 1042

 Score = 1234 bits (638), Expect = 0.0
 Identities = 641/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacactttcctttgtagacaattagagaaagcaatttccccccatgagattcctaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacactttcctttgtagacaattagagaaagcaatttccccccatgagattcctaagat 260

                                                                       
Query: 61  caaatataaatcctacaaggttaacataaagaaaggcatcctctgacactttccatcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatataaatcctacaaggttaacataaagaaaggcatcctctgacactttccatcaga 320

                                                                       
Query: 121 atacccaccaattccctatctttgatattgactatcccatttttaataaagttcctcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacccaccaattccctatctttgatattgactatcccatttttaataaagttcctcaat 380

                                                                       
Query: 181 tatagcccttcctactccagttagttgttatccttcacacagctttaccagatctgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagcccttcctactccagttagttgttatccttcacacagctttaccagatctgtcct 440

                                                                       
Query: 241 ttattttgattttgtgtatattgagtctttttagatttacagtaaggaatgaagaaggaa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattttgagtttgtgtatattgagtctttttagatttacagtaaggaatgaagaaggaa 500

                                                                       
Query: 301 ggagtccggtttttaatatgccaaatcttgctcaattctgaaatatttaatgaaagttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagtccggtttttaatatgccaaatcttgctcaattctgaaatatttaatgaaagttct 560

                                                                       
Query: 361 ttaatttgttattttgaggtattacccttggattaaatctagagaaaaatatataaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatttgttattttgaggtattacccttggattaaatctagagaaaaatatataaattt 620

                                                                       
Query: 421 gaagaatgcaatggaaaacatttttactaagagatacacccctgagatatatccatgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagaatgcaatggaaaacatttttactaagagatacacccctgagatatatccatgaga 680

                                                                       
Query: 481 ccacctctcaaatcaatgcacagggagatttgctgattcatgtccacataactttctccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccacctctcaaatcaatgcacagggagatttgctgattcatgtccacataactttctccc 740

                                                                       
Query: 541 tatgaaatatcaactgtgttacgttttctatggtaaatacctttattatctaatgatgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatgaaatatcaactgtgttacgttttctatggtaaatacctttattatctaatgatgaa 800

                                                     
Query: 601 ttaatttacttttattacataattttgaattaatttacttgt 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaatttacttttattacataattttgaattaatttacttgt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)