Query= MSMg01no509_n06.b1 MSMg01no509_n06.b1 CHROMAT_FILE:
MSMg01no509_n06.b1 PHD_FILE: MSMg01no509_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:12 2005
(580 letters)
>mm_chr11_6250542_6251522
Length = 981
Score = 586 bits (303), Expect = e-171
Identities = 389/437 (89%), Gaps = 37/437 (8%)
Strand = Plus / Minus
Query: 63 accaggactatacttgtcttccttgttggactaaggactgta----tcttctttct---- 114
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 981 accaggactatacttgtcttccttgttggactaaggactgtatctttcttctttctatct 922
Query: 115 -----------t-tctatctatc----tatctatctatc----tatctatctatctatct 154
| |||||||||| |||||||||||| |||||||||||||||||
Sbjct: 921 atctatctagatatctatctatctagatatctatctatctagatatctatctatctatct 862
Query: 155 atctatctatctatctatctatctatctatctatctatctatctattttttggtttttcc 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 atctatctatctatctatctatctatctatctatctatctatctattttttggtttttct 802
Query: 215 agacagggttcctctgtgtagccttggctgttcttttt----ctcactttgtagaccagg 270
||||||||||||||||||||||||||||||| | | |||||| |||||||||||
Sbjct: 801 agacagggttcctctgtgtagccttggctgtcc----tggaactcactctgtagaccagg 746
Query: 271 ctggccccgaactcataaatccgcctgcctctgcctcccgagtgctgggattaaaggtgt 330
||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| |||||
Sbjct: 745 ctggccccgaactcagaaatccacctgcctctgcctcctgagtgctgggattaatggtgt 686
Query: 331 gcaccaccacccccggcttagggactgtaccttgtctgactctcttacactccgtgct-c 389
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 685 gcgccaccacggccggcttagggactgtaccttgtttgactctcttacactccgtgctcc 626
Query: 390 ccagcacatgaggactcagttgtaccttgtctgactctcttacactccgtgctccccagc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagcacatgaggactcagttgtaccttgtctgactctcttacactccgtgctccccagc 566
Query: 450 acatgaggactcagttg 466
|||||||||||||||||
Sbjct: 565 acatgaggactcagttg 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_n06.g1 MSMg01no509_n06.g1 CHROMAT_FILE:
MSMg01no509_n06.g1 PHD_FILE: MSMg01no509_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:12 2005
(244 letters)
>mm_chr11_6069549_6070192
Length = 644
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%), Gaps = 1/245 (0%)
Strand = Plus / Plus
Query: 1 ctggctaggcatgggtgctctgtgcttatatttccagcattcaggaagaatattgtgagt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctaggcatgggtgctctgcgcttatatttccagcattcaggaagaatattgtgagt 260
Query: 61 caaagccagtctgacgagagccatatatccgcacacacgtgtgcacaaacagaatttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 caaagccagtctgacgagagccatatatccgcacacacgtgtgcacaaacagattttttt 320
Query: 121 taaatgacttaaattattgtccctaaaaccacagccatggaaggcatcagagatctggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatgacttaaattattgtccctaaaaccacagccatggaaggcatcagagatctggag 380
Query: 181 aagtcttaagaaagtctcagtctgccgggcg-tggtggcgcatgcctttaatcccagcac 239
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 381 aagtcttaagaaagtctcagtctgccgggcaatagtggcgcatgcctttaatcccagcac 440
Query: 240 ttggg 244
|||||
Sbjct: 441 ttggg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
