BAC Information

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BAC

Clone NameMSMg01-511D14
Chromosome11 (Build37)
Map Location 9,476,071 - 9,476,411
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneTns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511D14.T7 (MSMg01no511_d14.b1)MSMg01-511D14.TJ (MSMg01no511_d14.g1)
ACCAG584470AG584471
length710749
length of high quality
(start - end)
345 (45 - 389)541 (76 - 616)
definitionCHROMAT_FILE: MSMg01no511_d14.b1 PHD_FILE: MSMg01no511_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:01 2005CHROMAT_FILE: MSMg01no511_d14.g1 PHD_FILE: MSMg01no511_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGAACTTTTCTAAGCACAGGCAGAGAACACACCTATTCAAAATC
ATAGGCTTTTTGGAAAAGACTCATCTATTCTGAGCCCAAATGTGTTCCCT
CCACACCCTAATAAGACCTGCCAATATTTCCTGTGGTGACTGTTTAGCTT
GAGATACTGTAGTAGCTTTTAAATGCATGAGCATTCCCTAACACATTAAC
TTGTTCTCAAAATTATGAGACTCCAAAACCATGTGGCAGATTTTAGAGCC
TTGAGATAGCATTTGGTCATCTATAATCTGTTAGAGAAACGCCTATGTGT
TAAAAGATAAATTCTTGTACTTGACAAAGTGTGTGGGGGTATGAATGTGC
AAAGCCATATAGTATCTCAGAAACTCACTCAGTAGCATTCTTGTTCATAT
TGACCGAAGAATGCGTGGGAGACAGTGTTTCAAAGCATTTTTCCTAAAAA
TTTCCAAATAAAATAAAGGAAGCAATAAAAATAACCCGTCCAATAGGGGA
ACTTTTAACGAACTCACGGGGGGTAATATATGAACGGGCCCGGTTTGAAA
TAAACTTTTTTTCTGGGAAAAAATAAAATCCCCCTCCCTCAAACCCTCAA
AAAAAACTTTTTTATATGTGCCCCTTTTATGGGGAAAAAAAACACCCTGG
GTGTCCCCCC
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGTGTTTAATTTCATTTCTG
TACTTACCCAACTTTCATTCATTACAAAAATGCTCAATTTCTATAGATTT
GTAAACTTTCTGCTGTTGTTGATATCCAGCTTCAAATTCCTGGTGGCCTG
GCAGGACACAAGGGTTTATTTCAATTTTCTTGAGTATGTTCAGAATAGTC
TTGTGCCCAAGTATATTGTCAATTTTGGAGAAAGTTCCAACATGTGTAGA
GAAGAAGGTATACTCTTTTTTGTTCAGGGGAAATGTCCTGTAACTATCCG
TTAGGTCCATTTGGATTATAACATCTGTTTGCTCTTGTATTTCTCTGTTT
AGTTTTTGTCTGGAAGGCCTGTTCATTGATGAGAGTATTGAAGTCTCCCA
CTATCAGTGGTGAGGTTCAAATATGTGATTTAAACTATAGTATTGTTTCT
TTTACAAATTTAGGGGTCCTTGTGTTTAGGGCATAGATGTTAAGAATTGA
AATTTCATCTTGGTGGATTTTTCCTTTGATGAGTATGTAGTGATCTTCCC
CATCTCTTTTGATTAGTTTTGGTTTGAAATTAAAATAGATGCCCCATCTT
ACCTCCTTAGTTCATTTGCTTGGAATATACTTTTTCCAACCATTTTCCCT
GANGTAATGTTACCCTTGAAAGTTAAGTTTGTTTCTTGGATGCAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_d14.b1 MSMg01no511_d14.b1 CHROMAT_FILE:
MSMg01no511_d14.b1 PHD_FILE: MSMg01no511_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:01 2005
         (345 letters)



>mm_chr11_9475867_9476612
          Length = 746

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgg-aacttttctaagcacaggcagagaacacacctattcaaaatcataggct 63
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaattcttggaaacatttctaagcacaggcagagaacacacctattcaaaatcataggct 486

                                                                       
Query: 64  ttttggaaaagactcatctattctgagcccaaatgtgttccctccacaccctaataagac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 ttttggaaaagactcatctattctgagcccaaatgtgttccctccacacccaaataagac 426

                                                                       
Query: 124 ctgccaatatttcctgtggtgactgtttagcttgagatactgtagtagcttttaaatgca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctgccaatatttcctgtggtgactgtttagcttgagatactgtagtagcttttaaatgca 366

                                                                       
Query: 184 tgagcattccctaacacattaacttgttctcaaaattatgagactccaaaaccatgtggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgagcattccctaacacattaacttgttctcaaaattatgagactccaaaaccatgtggc 306

                                                                       
Query: 244 agattttagagccttgagatagcatttggtcatctataatctgttagagaaacgcctatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agattttagagccttgagatagcatttggtcatctataatctgttagagaaacgcctatg 246

                                                    
Query: 304 tgttaaaagataaattcttgtacttgacaaagtgtgtgggg 344
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgttaaaagataaattcttgtacttgacaaagtgtgtgggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space:   247632
Effective search space used:   247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)