BAC Information

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BAC

Clone NameMSMg01-511L12
Chromosome11 (Build37)
Map Location 5,185,706 - 5,186,259
singlet/doubletsinglet
Overlap geneZnrf3
Upstream geneHormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1
Downstream geneLOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511L12.T7 (MSMg01no511_l12.b1)MSMg01-511L12.TJ (MSMg01no511_l12.g1)
ACCAG584848AG584849
length740742
length of high quality
(start - end)
563 (67 - 629)554 (73 - 626)
definitionCHROMAT_FILE: MSMg01no511_l12.b1 PHD_FILE: MSMg01no511_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:39 2005CHROMAT_FILE: MSMg01no511_l12.g1 PHD_FILE: MSMg01no511_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTAAGGCCATTCCAAGTTAGCTAGATAAGAATTCCAGGTCTATCTAAGCA
ATACAGTGAGATCCTGTCTCAAGAAACAAACAAACAAAACAAAGAATCAC
CTGGGATTGATATGCTATGAGACAAAGTGGAGAATGGTAGGGGACATGGA
AATTGTTTTTTAAAAACCAAATGGAAACCGGGTGTAGTGGCGCATGCCTT
TAATCCCAGCTTTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGC
CAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA
ACCCTGTCTCGAAAAAAACAAAAACAAACAAACAAACAAAAAATCAAATA
GAATTCCTGAAAATAGAATTTCCTTAGGCACAGGGCCCAGTGAGATGGTT
CAGCAGGCAAAGGGACTTGCCATTAACCTGAAAACTTGAGTCTAATCCTC
TGAACCCACATGATAGAAGGACAGATCAATTATTTTAAGATGTGCCCAGA
CCTCCACTTCTGCCACAGATTTCGTGTGCGCACATGTACAAAGGAATAAA
ATGTGATAAAGATTGTACATTTTGTTATGAGAAATAGAAGCTTGGGGAGG
TGAGCATACATGTGTGCAGACAAACCACCCATTCGCATAAAATAGAATAA
ATAATCTAAAAACCCAGGTAAGAGTCCAGATAGATCACCA
AATGCTTCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGAACAGGCTGGCTGTGCAGGCTCTG
GAGAAGATGGAAACCAGAAAGTTCAACTCCAAGAGCAAGGGGCGCCGGGA
AGGAAGCTGTGGGGCCCTGGACACACTGAGCAGCGGCTCCACATCCGACT
GTGCCATCTGTCTGGAGAAGTACATTGACGGAGAGGTAGCTGCAGGATCA
GGGCCTGCCTTGGGTGGGAAGGGATGTACAGAGGCCCCAGGAGGTGCTGG
GGACTACCATGACCATGACTAGAGTTCTCCACAACCTAGATTCAGTGCGT
AAGCTTCTAAAGGCATTTCTTCCTGGGGCTGGGAAAACACAATACTCTAT
AGATGGTCTAGCTAATAAGTACATGGTTGGCCAGGGTAGTAGCACATGCC
AGTAGTTTTAGTGCTTGAGAGACTACTCAAAAGAAGTGTGAGTTTAAGAT
CCCGGCTTTGCCAAAATGCACATGGTTGAACAGAAAATATATAGATGTAA
GATCAAGTTGCTTACTTTGCTTTGAAGAACTGGTTAAGTAATGAGTTTAC
TTGGAGAAAGTCTAGAAATGTGATGCCTTTTGTTTTTTCTTGTAGCCCTC
TATTAAGAGTTGCAAGTATCACGAACAGCACAGAAACACCATTCACATAT
TTTGCCGCCTTTATGTCTGGCTTCACAAGGACAAGTACCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_l12.g1 MSMg01no511_l12.g1 CHROMAT_FILE:
MSMg01no511_l12.g1 PHD_FILE: MSMg01no511_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:39 2005
         (554 letters)



>mm_chr11_5185506_5186459
          Length = 954

 Score = 1071 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaacaggctggctgtgcaggctctggagaagatggaaaccagaaagttcaactccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 catgaacaggctggctgtgcaggctctggagaagatggaaaccagaaagttcaactccaa 695

                                                                       
Query: 61  gagcaaggggcgccgggaaggaagctgtggggccctggacacactgagcagcggctccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gagcaaggggcgccgggaaggaagctgtggggccctggacacactgagcagcggctccac 635

                                                                       
Query: 121 atccgactgtgccatctgtctggagaagtacattgacggagaggtagctgcaggatcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atccgactgtgccatctgtctggagaagtacattgacggagaggtagctgcaggatcagg 575

                                                                       
Query: 181 gcctgccttgggtgggaagggatgtacagaggccccaggaggtgctggggactaccatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gcctgccttgggtgggaagggatgtacagaggccccaggaggtgctggggactaccatga 515

                                                                       
Query: 241 ccatgactagagttctccacaacctagattcagtgcgtaagcttctaaaggcatttcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccatgactagagttctccacaacctagattcagtgcgtaagcttctaaaggcatttcttc 455

                                                                       
Query: 301 ctggggctgggaaaacacaatactctatagatggtctagctaataagtacatggttggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctggggctgggaaaacacaatactctatagatggtctagctaataagtacatggttggcc 395

                                                                       
Query: 361 agggtagtagcacatgccagtagttttagtgcttgagagactactcaaaagaagtgtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agggtagtagcacatgccagtagttttagtgcttgagagactactcaaaagaagtgtgag 335

                                                                       
Query: 421 tttaagatcccggctttgccaaaatgcacatggttgaacagaaaatatatagatgtaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttaagatcccggctttgccaaaatgcacatggttgaacagaaaatatatagatgtaaga 275

                                                                       
Query: 481 tcaagttgcttactttgctttgaagaactggttaagtaatgagtttacttggagaaagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcaagttgcttactttgctttgaagaactggttaagtaatgagtttacttggagaaagtc 215

                         
Query: 541 tagaaatgtgatgc 554
           ||||||||||||||
Sbjct: 214 tagaaatgtgatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)