BAC Information

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BAC

Clone NameMSMg01-512C07
Chromosome11 (Build37)
Map Location 3,724,343 - 3,724,547
singlet/doubletsinglet
Overlap geneOsbp2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneLOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512C07.T7 (MSMg01no512_c07.b1)MSMg01-512C07.TJ (MSMg01no512_c07.g1)
ACCAG585172AG585173
length726734
length of high quality
(start - end)
390 (66 - 455)554 (71 - 624)
definitionCHROMAT_FILE: MSMg01no512_c07.b1 PHD_FILE: MSMg01no512_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:12 2005CHROMAT_FILE: MSMg01no512_c07.g1 PHD_FILE: MSMg01no512_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGTGGCCGCGAAACGACTCACTTTCCAGAGAGGATCCGCGGAATTCT
ACTCTGTCTTTAGAGATTCTCGCCCATGTATTAGTCAGGGTTCTCTAGAG
GAACAAAACTGAAAATAAGTATAAATATATAACACAAAGGAGGGATTTAG
GGGAATCAGCTTACACTGTTTCATCTGCATAGTCCAACAATGTCTGCCTG
CACTCTGGAGACTGAGGCCCCAGTGTCTGCTCAGTCCATGGGTGGGAGAC
CGGGAGGTGTATGTGTAGGGTACTCCTCGGTAGCCCTGACCGGGTGCTGA
AGACCTGCATGATTCCTGGAGAGCCACTGGCTTTTCTGGGTTGGTTTGTT
TATTTGTTTTTCAGTTCATTTTGGAAGACTGAAGAAACTGGGTTTTGATG
TCAGTAAAGGATGGCAGCTGGGGTGATGTCAACAGAGTGGATACACTCAC
AGCAGGTCATAAAGGAGAGCAGACTGCCTTCCCCACATCCATGTTTATAT
CTAGGCTGCCAAGGGAAGGTTCCGCTCACTCTGGAGGAGCCCCTGCCCTT
CAGGAAATAGCTTCATAGAGCCACCCAAAGAGTGTCTCTTACTTGATCCC
AAGTTAGTCAACTAGATTTAACAGTCACAGCATACAGTCTGTAACTCTGG
CTATGCTGCTGTTGACAAGAAAGATCTCACTTCTCTACCAATTACTCCTC
CAGTCCTTGCTTGGCTTCATGAACTG
CTTTGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGATATTGGACATTTAATTATTAACACTG
TTGAATTTTGTTTTTGCTCTGTTCAGATTGTGACTATATATTAGTTCTTT
CCTCTTGTGATGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGA
AGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTCA
CTGTGGGTGTGGGTATAAGATCCTCACCCTAGTTGCCTGGAAGTCAGTCT
TCCACTAGCAGCCTTTGGATGAAGATGTAGAATTCTCAGCTCTGCCTGCA
CCATGCCTGCCTGAATACTGCCATGCTCCCACCTTGATGATAATGGACTG
AACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTTTTTTATAAGA
CTTGCCTTGGTCATGGTGTCTGTTCACAGGAGTAAAACCCTAACTAAGAC
ACCTCTTGAAGTAAGGAAAGTATTTACCTTAATGTAGGTTTGTATAGGAG
CCCACAGTGGAAACTTTGAACTTTTAAAAGAACTTTTGGATTTTTAAAGA
GACTGGATATTTTGCTAGGCTGTGGTAGCGCACACCTTTAATCCCAGCTC
TCATGAGGCATAGGCAGGTAGATCTCTATGAGTCAGATGGTCAATCTGGT
CTACAGAGCTAGCTCCAGGAAAGGTTTACTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_c07.b1 MSMg01no512_c07.b1 CHROMAT_FILE:
MSMg01no512_c07.b1 PHD_FILE: MSMg01no512_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:12 2005
         (390 letters)



>mm_chr11_3723958_3724747
          Length = 790

 Score =  373 bits (193), Expect = e-108
 Identities = 202/205 (98%)
 Strand = Plus / Minus

                                                                       
Query: 186 cgggaggtgtatgtgtagggtactcctcggtagccctgaccgggtgctgaagacctgcat 245
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 590 cgggaggtgtatgtgtagggtattcctcggtagccctgaccgggtgctgaagacctgcag 531

                                                                       
Query: 246 gattcctggagagccactggcttttctgggttggtttgtttatttgtttttcagttcatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 530 gattcctggagagccactggcttttctgggttggtttgtttatttgtttttcagttcgtt 471

                                                                       
Query: 306 ttggaagactgaagaaactgggttttgatgtcagtaaaggatggcagctggggtgatgtc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttggaagactgaagaaactgggttttgatgtcagtaaaggatggcagctggggtgatgtc 411

                                    
Query: 366 aacagagtggatacactcacagcag 390
           |||||||||||||||||||||||||
Sbjct: 410 aacagagtggatacactcacagcag 386



 Score = 78.1 bits (40), Expect = 9e-19
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                       
Query: 186 cgggaggtgtatgtgtagggtactcctcggtagccctgaccggg 229
           ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 750 cgggaggtgtatgtgtagggtactcctcggtagccctgatcggg 707



 Score = 78.1 bits (40), Expect = 9e-19
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                       
Query: 186 cgggaggtgtatgtgtagggtactcctcggtagccctgaccggg 229
           ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 790 cgggaggtgtatgtgtagggtactcctcggtagccctgatcggg 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)