BAC Information

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BAC

Clone NameMSMg01-512F02
Chromosome11 (Build37)
Map Location 97,131,177 - 97,131,567
singlet/doubletsinglet
Overlap geneNpepps
Upstream geneHoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1
Downstream geneEG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F02.T7 (MSMg01no512_f02.b1)MSMg01-512F02.TJ (MSMg01no512_f02.g1)
ACCAG585305AG585306
length731828
length of high quality
(start - end)
613 (43 - 655)64 (72 - 135)
definitionCHROMAT_FILE: MSMg01no512_f02.b1 PHD_FILE: MSMg01no512_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:26 2005CHROMAT_FILE: MSMg01no512_f02.g1 PHD_FILE: MSMg01no512_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATTATTATTGCCACTTTTAAAAAAATTAACTTAGATGACATTTTTGT
TTTGAAACAGGAAGATTTGTAAGAAGTTTTTAAAAAAGTAAGTGTGTGTG
TGTGTGTTTTGGATCTTGAACAAAGGGCCTTGTATGATCTTAAGGAATAA
GAGTTTAGGGGCTGGTGAGATGGTCACTGACTGCTCTTCCAGAGGTCCTG
AGTTAAAATCCCAGCAACCACATGGTGGCTCACGGCCATCCATAATGAGA
TCTGACGCCCTCTTCTGGTGTAGCTGAAGACAGCTACGGTGTACTTACAT
ATAATAATAAATCTTAGCAGGGCTGGAGTGAGTGGGGCTGAGTAGCAGAG
GTCCTGAGTTCAGTTCCCAGCAACCACATGATGGATCATAACTATCTGTA
CAGGAACAGTGTATTCATATACATAAAATCGATACATAAATCTTTAAAAA
AACTTTTTAACAAACACTTAGGGGAAAACACAAGATGATTAATAATCAGT
GTTAGTAACTCAGGAGATTATAATTTAAACCATCGAATGACATTTAATAT
TCATCAGATTGTTAGACTTTTTTTAAAAAAATAATTTAGGTTTTTTTTGG
TTTGTTTGTTTGTTTGGNTTTTTTTGTTTTGCTTTTTGTTTTGTTTTTTT
GAATTTTTTTTTTTTTTTTAGAACAGGCTTC
ACAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTAAGCATGCGTTCGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGCTACCTTTCACTA
TCATAACTACCTTAAACCCCCCACCCCCATCACTCCCACCACCACAACCC
CACCCATCACCATCTAATAACACTACCCCCCAACCCCCACACATCTACAC
ACAAAACACACGCCCACCCCCCACACCACTAAAACAACGACCCCACCCAA
CCGCCCCCAAAAATCCCCCCAATACTCACATACCACCTCCACACACCATC
TCACCAAAAATACAACAAACCCCCTCCCCAATTCCCACTAACAAAAACCA
CAACCACACCCTATAACACACACCTTCCCCACCATATAACCACTAATCTT
AACCCCCCCTATCCCACCCACTCCAATCCACCACCCTCAAATTACACACT
CACAAACCAACTCCCAATACAAACCCCTCACCTTACCAATTTCTCACTAA
TATCCTCTTCACCAATCACGCCCCAAATCCACCCATATTCTCACAATCAA
AATCAAATAATTATATCCCAACCACCCCTCTACATACACCCCCCCCACTT
ATTCCCCACTATAACCCCAATAATATTCACCTCCTATCATACTACTCCCC
CATACCCCCTAACATCCAACTTCCATACCTTAAACAAAATCATAACAACC
CCACCAACCCATTCCCACACAAAACCACTCTAAACACCACACACCACCTT
ACACCACATAAATCAACCAATAACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f02.b1 MSMg01no512_f02.b1 CHROMAT_FILE:
MSMg01no512_f02.b1 PHD_FILE: MSMg01no512_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:26 2005
         (613 letters)



>mm_chr11_97130555_97131567
          Length = 1013

 Score =  733 bits (379), Expect = 0.0
 Identities = 388/391 (99%)
 Strand = Plus / Minus

                                                                        
Query: 223  caaccacatggtggctcacggccatccataatgagatctgacgccctcttctggtgtagc 282
            ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1013 caaccacatggtggctcacagccatccataatgagatctgatgccctcttctggtgtagc 954

                                                                        
Query: 283  tgaagacagctacggtgtacttacatataataataaatcttagcagggctggagtgagtg 342
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 953  tgaagacagctacggtgtacttacatataataataaatcttaggagggctggagtgagtg 894

                                                                        
Query: 343  gggctgagtagcagaggtcctgagttcagttcccagcaaccacatgatggatcataacta 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  gggctgagtagcagaggtcctgagttcagttcccagcaaccacatgatggatcataacta 834

                                                                        
Query: 403  tctgtacaggaacagtgtattcatatacataaaatcgatacataaatctttaaaaaaact 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  tctgtacaggaacagtgtattcatatacataaaatcgatacataaatctttaaaaaaact 774

                                                                        
Query: 463  ttttaacaaacacttaggggaaaacacaagatgattaataatcagtgttagtaactcagg 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  ttttaacaaacacttaggggaaaacacaagatgattaataatcagtgttagtaactcagg 714

                                                                        
Query: 523  agattataatttaaaccatcgaatgacatttaatattcatcagattgttagacttttttt 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  agattataatttaaaccatcgaatgacatttaatattcatcagattgttagacttttttt 654

                                           
Query: 583  aaaaaaataatttaggttttttttggtttgt 613
            |||||||||||||||||||||||||||||||
Sbjct: 653  aaaaaaataatttaggttttttttggtttgt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)