BAC Information

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BAC

Clone NameMSMg01-513I23
Chromosome11 (Build37)
Map Location 87,207,618 - 87,403,113
singlet/doubletdoublet
Overlap geneRad51c, Tex14, Sept4
Upstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e
Downstream geneMtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513I23.T7 (MSMg01no513_i23.b1)MSMg01-513I23.TJ (MSMg01no513_i23.g1)
ACCAG586252AG586253
length752762
length of high quality
(start - end)		656 (38 - 693)633 (67 - 699)
definitionCHROMAT_FILE: MSMg01no513_i23.b1 PHD_FILE: MSMg01no513_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:05 2005CHROMAT_FILE: MSMg01no513_i23.g1 PHD_FILE: MSMg01no513_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,402,462 - 87,403,113)(87,207,618 - 87,208,250)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTA
AGGTTTACGGGACTCTGGTCCCAAGCTCAGAGCTTTACCTTCCACGATGC
CCCAAGGGTAGAGGCGGCCTCGAACTCTCCGCCCCCTGGCTTCTACCACA
GTGTTGCTGCCAATCACCGCAAATGGGATGCTTTCCTAAGAGAAGGTACA
GTGGCCTGTCAGCATCCTTGTTCCATCCCCTGTCCCTCTCCACTTGGGTC
TTCTGCTTTGCTCTAAGATGACAGGGTCCTCTTCCACCCCAACAGTCTGT
CCTTGTATAGAATCCTCCTCCCCTCTTCTGCTCAGCAGAAACAAGATAGG
GAGGGGAGGCCCTAGGGTGGCCCCACCTTTAGGGCTTGGTCCTGTAATTT
GAAGTCCTCGTCCTCATCGGAATCACAGTCTGGGAACTGATAGATCTTGA
TTCCAAAGTGCTCGATCTCCTCCCGGATCTGGCAAACAGATGAGGGGTCC
ACAGTTCTGGGTACCCCATCCTTTCTAGACGCCCACCTGGCCCCCTCCCT
CCACTAGCCTCCCTCACTTTGCATTTCTTTCGGTCCACTTCAGGAGGCGT
CAGTGTGTCCGCCTTAGCCAAGATAGGCACAATGTTGACCCGCTGATGCA
GGGCCTTCATGAATTCAACATCCAATGGCCGGAGCCTGGGGAACAGGAAT
CAGTGACCACCCGCTAGTGGTAGCCCTGCCCTGTGGTGCTACTCGGCCTG
TN

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAATTAACAGTAAGAAATAATGCAAACGGCACTA
TGCTTTGGCAAAAAGAATATGGCAAAAGGGCTAGTGAGATGGCTCAGTGA
AAGGCACTGCCATGGACACAACCTAAGTTTGATCCCTGAGACCCCAGAGT
GGAAGGAACTGACTTCTGCAAGTTGTCTTCTAACCCTGTACTACGATACA
TGTAACAACACATGTACATGCACACAGAATAAGTAAAATGTAACTTAAGA
ATAAGATCTGGGGGCAGGAGCGAGTGGGGCTGGAGTGAGAAGAAAAAAAA
AGAATAAGATCTGGAAAAGAAAATATTTTTAATTTTATAGAGGAAGTTCT
TTAAAAAACAAAAAAGATTTATTTACTATATGTAAATACACTGTAGCTGT
CTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGA
GCCACCACGTGGTTGCTGGGAATTGAACTCAGGACCTCCGGAAGAGCAGT
CAGGGCTCTTAACCACTGAGCCACCTCTCCAGCCCAGAGGAAGTTCTTTT
TATTTGTGTTTGGTGTATTATAGGCATGTACTAAGAACTTCCTTAACAAG
GTTAAAAAGAAAAAAAAACAACAACTTATAAGCATTTTACCTCTCTTTTT
ACGAGTATATTTTTGTCAGTGGAAGGATGTGGCTGCAGAATGGAAACAAA
TAGCATACAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_i23.b1 MSMg01no513_i23.b1 CHROMAT_FILE:
MSMg01no513_i23.b1 PHD_FILE: MSMg01no513_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:05 2005
         (656 letters)



>mm_chr11_87402258_87403313
          Length = 1056

 Score = 1230 bits (636), Expect = 0.0
 Identities = 648/652 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaggtttacgggactctggtcccaagctcagagctttaccttccacgatgcc 64
           ||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcctaagggcaaggggactctggtcccaagctcagagctttaccttccacgatgcc 797

                                                                       
Query: 65  ccaagggtagaggcggcctcgaactctccgccccctggcttctaccacagtgttgctgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ccaagggtagaggcggcctcgaactctccgccccctggcttctaccacagtgttgctgcc 737

                                                                       
Query: 125 aatcaccgcaaatgggatgctttcctaagagaaggtacagtggcctgtcagcatccttgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aatcaccgcaaatgggatgctttcctaagagaaggtacagtggcctgtcagcatccttgt 677

                                                                       
Query: 185 tccatcccctgtccctctccacttgggtcttctgctttgctctaagatgacagggtcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tccatcccctgtccctctccacttgggtcttctgctttgctctaagatgacagggtcctc 617

                                                                       
Query: 245 ttccaccccaacagtctgtccttgtatagaatcctcctcccctcttctgctcagcagaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttccaccccaacagtctgtccttgtatagaatcctcctcccctcttctgctcagcagaaa 557

                                                                       
Query: 305 caagatagggaggggaggccctagggtggccccacctttagggcttggtcctgtaatttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caagatagggaggggaggccctagggtggccccacctttagggcttggtcctgtaatttg 497

                                                                       
Query: 365 aagtcctcgtcctcatcggaatcacagtctgggaactgatagatcttgattccaaagtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagtcctcgtcctcatcggaatcacagtctgggaactgatagatcttgattccaaagtgc 437

                                                                       
Query: 425 tcgatctcctcccggatctggcaaacagatgaggggtccacagttctgggtaccccatcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcgatctcctcccggatctggcaaacagatgaggggtccacagttctgggtaccccatcc 377

                                                                       
Query: 485 tttctagacgcccacctggccccctccctccactagcctccctcactttgcatttctttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tttctagacgcccacctggccccctccctccactagcctccctcactttgcatttctttc 317

                                                                       
Query: 545 ggtccacttcaggaggcgtcagtgtgtccgccttagccaagataggcacaatgttgaccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggtccacttcaggaggcgtcagtgtgtccgccttagccaagataggcacaatgttgaccc 257

                                                               
Query: 605 gctgatgcagggccttcatgaattcaacatccaatggccggagcctggggaa 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gctgatgcagggccttcatgaattcaacatccaatggccggagcctggggaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_i23.g1 MSMg01no513_i23.g1 CHROMAT_FILE:
MSMg01no513_i23.g1 PHD_FILE: MSMg01no513_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:05 2005
         (633 letters)



>mm_chr11_87207418_87208450
          Length = 1033

 Score = 1201 bits (621), Expect = 0.0
 Identities = 630/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattaacagtaagaaataatgcaaacggcactatgctttggcaaaaagaatatggcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattaacagtaagaaataatgcaaacggcactatgctttggcaaaaagaatatggcaaa 260

                                                                       
Query: 61  agggctagtgagatggctcagtgaaaggcactgccatggacacaacctaagtttgatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctagtgagatggctcagtgaaaggcactgccatggacacaacctaagtttgatccc 320

                                                                       
Query: 121 tgagaccccagagtggaaggaactgacttctgcaagttgtcttctaaccctgtactacga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagaccccagagtggaaggaactgacttctgcaagttgtcttctaaccctgtactacga 380

                                                                       
Query: 181 tacatgtaacaacacatgtacatgcacacagaataagtaaaatgtaacttaagaataaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatgtaacaacacatgtacatgcacacagaataagtaaaatgtaacttaagaataaga 440

                                                                       
Query: 241 tctgggggcaggagcgagtggggctggagtgagaagaaaaaaaaagaataagatctggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgggggcaggagcgagtggggctggagtgagaagaaaaaaaaagaataagatctggaa 500

                                                                       
Query: 301 aagaaaatatttttaattttatagaggaagttctttaaaaaacaaaaaagatttatttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 aagaaaatatttttaattttatagaggaagttctttaaaaaacaaaaaaaatttatttac 560

                                                                       
Query: 361 tatatgtaaatacactgtagctgtcttcagacacaccagaagagggcatcagatcccatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatgtaaatacactgtagctgtcttcagacacaccagaagagggcatcagatcccatt 620

                                                                       
Query: 421 acagatggttgtgagccaccacgtggttgctgggaattgaactcaggacctccggaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagatggttgtgagccaccacgtggttgctgggaattgaactcaggacctccggaagag 680

                                                                       
Query: 481 cagtcagggctcttaaccactgagccacctctccagcccagaggaagttctttttatttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtcagggctcttaaccactgagccacctctccagcccagaggaagttctttttatttg 740

                                                                       
Query: 541 tgtttggtgtattataggcatgtactaagaacttccttaacaaggttaaaaagaaaaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtttggtgtattataggcatgtactaagaacttccttaacaaggttaaaaagaaaaaaa 800

                                            
Query: 601 aacaacaacttataagcattttacctctctttt 633
           || ||||||||| ||||||||||||||||||||
Sbjct: 801 aaaaacaacttaaaagcattttacctctctttt 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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