Query= MSMg01no515_m08.b1 MSMg01no515_m08.b1 CHROMAT_FILE:
MSMg01no515_m08.b1 PHD_FILE: MSMg01no515_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:13 2005
(534 letters)
>mm_chr11_67623896_67624829
Length = 934
Score = 949 bits (491), Expect = 0.0
Identities = 521/531 (98%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 5 tgaggaag-cagattaactacaaccacacagaatactacatggagcctttcttgggatgt 63
||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgagg-agacagattaaccacaaacacacagaatactacatggagcctttcttgggatgt 263
Query: 64 tattaggtttggggtaaaaaccaagttgtgtgggaaatgctggcttccagtccagcttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattaggtttggggtaaaaaccaagttgtgtgggaaatgctggcttccagtccagcttgt 323
Query: 124 ctcagtttctttactgctggactgttcagagcctttgatatgctagtatgtatttccccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcagtttctttactgctggactgttcagagcctttgatatgctagtatgtatttccccc 383
Query: 184 aaagaacttagagattggtgactatttcccaaacatatgtgaccctcagtgggaaccttc 243
|||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagaacttaaaaatcgatgactatttcccaaacatatgtgaccctcagtgggaaccttc 443
Query: 244 tcttcgagggtgtatatcagaactagcatttgccacaagttgccttgactccaggatact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttcgagggtgtatatcagaactagcatttgccacaagttgccttgactccaggatact 503
Query: 304 accaagccctgcccccatccttacttctaaaccagtaacaccttgaggacagcacgtgtc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accaagccctgcccccatccttacttctaaaccagtaacaccttgaggacagcacgtgtc 563
Query: 364 cagagctgagtacagctcccagtacataattgatgcttcagaagcgctctatggaataca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagagctgagtacagctcccagtacataattgatgcttcagaagcgctctatggaataca 623
Query: 424 cgattttgatccaaaacaaaggatgcctgccaatggccgtgctggattttcttgttgcct 483
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 cgattttgatccaaaacaaaggatgcctgccaacggccgtgctggattttcttgttgcct 683
Query: 484 tattataaaacaaattggtaagcaatttccaaaagaaaccaatagtactca 534
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 684 tattataaaacaaattggtaagcaatttccaaaagaaaccagtagtactca 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_m08.g1 MSMg01no515_m08.g1 CHROMAT_FILE:
MSMg01no515_m08.g1 PHD_FILE: MSMg01no515_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:13 2005
(614 letters)
>mm_chr11_67806407_67807424
Length = 1018
Score = 1083 bits (560), Expect = 0.0
Identities = 599/618 (96%), Gaps = 11/618 (1%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaagcctatctggggttgggggagtggagagcca-- 58
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 853 caggacagccagggctacacagagaaagcctatct-------ggggagtggagagccatg 801
Query: 59 --tctttagaacttaggtcactgtaaatgcatggagtaggtgcatgcaactttactaaga 116
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 800 tttctttagaacttaggtcactgtaaatgcatggtgtaggtgcatgcaacttttctaaga 741
Query: 117 tagcacatgacaaatctctccttggggaagctgagtacacaggcaaacaggtgcaggaac 176
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 tagcacgtgacaaatctctccttggggaagctgagtgcacaggcaaacaggtgcaggaac 681
Query: 177 tgctgacacgggtctgactggttctgacttagtaggtgagagtttccaaatacccagaat 236
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 tgctgacacaggtctgactggttctgacttagtgggtgagagtttccaaatacccagaat 621
Query: 237 ttccaatgcgtatggcctcagaacgagcctccatttctgagattttcttcagagagacat 296
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 620 ttccaatgcgtatggcctcagaacgagcctccacttctgagattttcttcagagagacat 561
Query: 297 tctgacacacgagaaattgcccacatttcagattatctgctgagagacagtctcgcatat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctgacacacgagaaattgcccacatttcagattatctgctgagagacagtctcgcatat 501
Query: 357 cccagaccagtactgaacttctgtggtagaaaatattgaacttttttataatagaaagac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccagaccagtactgaacttctgtggtagaaaatattgaacttttttataatagaaagac 441
Query: 417 aaagatacaaaatataactattaattagttaaattaattatggtatgtgtacatgatgaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagatacaaaatataactattaattagttaaattaattatggtatgtgtacatgatgaa 381
Query: 477 acatactaaatactaatatctaatttaatactaattcaatactaatttaatactaataac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acatactaaatactaatatctaatttaatactaattcaatactaatttaatactaataac 321
Query: 537 tttatactaaactatcaactacaaatctgaatgggaaaaatctcttgagatataatcata 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttatactaaaatatcaactacaaatctgaatgggaaaaatctcttgagatataatcata 261
Query: 597 tataaagtatgtatgaaa 614
||||||||||||||||||
Sbjct: 260 tataaagtatgtatgaaa 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1018
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1008
Effective search space: 608832
Effective search space used: 608832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
