BAC Information

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BAC

Clone NameMSMg01-515N07
Chromosome11 (Build37)
Map Location 46,801,739 - 46,967,550
singlet/doubletdoublet
Overlap geneSgcd
Upstream geneSox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515N07.T7 (MSMg01no515_n07.b1)MSMg01-515N07.TJ (MSMg01no515_n07.g1)
ACCAG587974AG587975
length784789
length of high quality
(start - end)		636 (45 - 680)588 (76 - 663)
definitionCHROMAT_FILE: MSMg01no515_n07.b1 PHD_FILE: MSMg01no515_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:19 2005CHROMAT_FILE: MSMg01no515_n07.g1 PHD_FILE: MSMg01no515_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,967,167 - 46,967,550)(46,801,739 - 46,802,326)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTTAGCCATGGTGACAATCTAGCTATAAAACTCATTTTACCTTG
GAAAACAAATTTTGAACCCATAGAGTAACATATCCCACCGGTGACACTAA
GGCTACCTGTGGACATATACAGCCAAGGACAGATGTGAAGATGGCCCAAC
ACAAAATTATAAGCTTACTTAAAACACTATGAGACATTTTAAAACTTCCT
TGCTCAATTCTGAAGAACATGAACTTTGTGGCATGGTCAATGTTGCCCTG
CCTATAGGTTGTAAGCTGGCAAGACTTCATGTTCCTCTTCTCCTACACTG
CCACCTAGCCTCCTTTCTTGTTATGAATTTGGGTGTTCACATCCCACATA
AGTGAATCATGTGGTACCTTCATTTTATGACTGGCTCATTTTGCTTAGCA
CAACAGCCTTCAAGTTCTCCTCTTATGTCAGTGTTGGGTTTTTCTTATGC
TTGAGATCCAATGGTCTCATTCTCATTCACTATTTATCTAATCATGAATC
GATCACATTTTAAAAGTCCTGAAGCACACTGATTGACTCATCTTGAGTTT
CAAAAGTCCCATCATTTTATAATCAAGAAGAGACACAAAAGCAGAAATGT
CTATCCCCCATTCCCAAGCCTATGCAGACCTAAGTCATCAGTGGCTCAGC
AACCAACTTGTATAAACCAATGGGGCAGGCTTGCAGATTCCATAACAAAA
ATTTCTGTTACTCTTCTTCCATATTACCACAAGT

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGGTTGATTTTAATAAGCAC
CCCCTCCTTTTTGTATATTTTCACTGCACATAGAAGCTTAAGTTTTATCT
GTTTTTTTCTACTTTAATGGCTTTGCATTGTAGCTCTGTTGTCCCTTGAA
CTGTAGCACCAGAGGTTGTTTTAAGATTCAAAGTGTTAATTTTGCCCCCA
TCAGTTCTATCTATTTAATATTGAATTACAGTCCCTGAATTCCTCCCTGC
CTTTTTATTTCAAATAAGCTAGAATAACTCACTGGTTGTTCTAACTTCTA
ACATGTATCATTTCTTAAATCCTTACTTTTCTAAAGTATATGCATTGTTA
TGCATGTTAATAGCATTCCCAAAGAATATTTATAATGTATCTGTGACTTT
TTAAAAATTGCAGTGTGATCACTCTTGGGGCCTCTGAGCTTTTTCAAAAG
TTATTCTTATTTCTTACTTTCTAAAAATATGAGATCTCCCAGAATGGATT
TCTAGATATGCCTTCTATATGTTTTTATTATTGATTCTGAACTTTTGAAC
ATTGTCTTTGAACTGACAATCCTAGAATAGAAGCTGTTTTCTGCATGAAA
TCAATTCTGTAAAAGTTGAAACTGCTTTCTTTGGGTCTGTTAATGTCAAT
TTTTTAAAACCCTTCATGAACCTGTGTATTTCAGGTGTTGGCACCCTATT
CTTTATGTTACATTAACTGTCTAGGTTGTGCTTGGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_n07.b1 MSMg01no515_n07.b1 CHROMAT_FILE:
MSMg01no515_n07.b1 PHD_FILE: MSMg01no515_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:19 2005
         (636 letters)



>mm_chr11_46966515_46967550
          Length = 1036

 Score =  719 bits (372), Expect = 0.0
 Identities = 381/384 (99%)
 Strand = Plus / Minus

                                                                        
Query: 253  cctgcctataggttgtaagctggcaagacttcatgttcctcttctcctacactgccacct 312
            ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 1036 cctgcctataggttgtaagctggcaagacttaatgttcctcttctcctaccctgccacct 977

                                                                        
Query: 313  agcctcctttcttgttatgaatttgggtgttcacatcccacataagtgaatcatgtggta 372
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  agcctcctttattgttatgaatttgggtgttcacatcccacataagtgaatcatgtggta 917

                                                                        
Query: 373  ccttcattttatgactggctcattttgcttagcacaacagccttcaagttctcctcttat 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ccttcattttatgactggctcattttgcttagcacaacagccttcaagttctcctcttat 857

                                                                        
Query: 433  gtcagtgttgggtttttcttatgcttgagatccaatggtctcattctcattcactattta 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  gtcagtgttgggtttttcttatgcttgagatccaatggtctcattctcattcactattta 797

                                                                        
Query: 493  tctaatcatgaatcgatcacattttaaaagtcctgaagcacactgattgactcatcttga 552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  tctaatcatgaatcgatcacattttaaaagtcctgaagcacactgattgactcatcttga 737

                                                                        
Query: 553  gtttcaaaagtcccatcattttataatcaagaagagacacaaaagcagaaatgtctatcc 612
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  gtttcaaaagtcccatcattttataatcaagaagagacacaaaagcagaaatgtctatcc 677

                                    
Query: 613  cccattcccaagcctatgcagacc 636
            ||||||||||||||||||||||||
Sbjct: 676  cccattcccaagcctatgcagacc 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_n07.g1 MSMg01no515_n07.g1 CHROMAT_FILE:
MSMg01no515_n07.g1 PHD_FILE: MSMg01no515_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:19 2005
         (588 letters)



>mm_chr11_46801539_46802526
          Length = 988

 Score = 1114 bits (576), Expect = 0.0
 Identities = 585/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcaggttgattttaataagcaccccctcctttttgtatattttcactgcacatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcaggttgattttaataagcaccccctcctttttgtatattttcactgcacatagaa 260

                                                                       
Query: 61  gcttaagttttatctgtttttttctactttaatggctttgcattgtagctctgttgtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttaagttttatctgtttttttctactttaatggctttgcattgtagctctgttgtccc 320

                                                                       
Query: 121 ttgaactgtagcaccagaggttgttttaagattcaaagtgttaattttgcccccatcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaactgtagcaccagaggttgttttaagattcaaagtgttaattttgcccccatcagt 380

                                                                       
Query: 181 tctatctatttaatattgaattacagtccctgaattcctccctgcctttttatttcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctatctatttaatattgaattacagtccctgaattcctccctgcctttttatttcaaat 440

                                                                       
Query: 241 aagctagaataactcactggttgttctaacttctaacatgtatcatttcttaaatcctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctagaataactcactggttgttctaacttctaacatgtatcatttcttaaatcctta 500

                                                                       
Query: 301 cttttctaaagtatatgcattgttatgcatgttaatagcattcccaaagaatatttataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttctaaagtatatgcattgttatgcatgttaatagcattcccaaagaatatttataa 560

                                                                       
Query: 361 tgtatctgtgactttttaaaaattgcagtgtgatcactcttggggcctctgagctttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtatctgtgactttttaaaaattgcagtgtgatcactcttggggcctctgagctttttc 620

                                                                       
Query: 421 aaaagttattcttatttcttactttctaaaaatatgagatctcccagaatggatttctag 480
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagctattcttatttctaactttctaaaaatatgagatctcccagaatggatttctag 680

                                                                       
Query: 481 atatgccttctatatgtttttattattgattctgaacttttgaacattgtctttgaactg 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatgccttctatatgttttcattattgattctgaacttttgaacattgtctttgaactg 740

                                                           
Query: 541 acaatcctagaatagaagctgttttctgcatgaaatcaattctgtaaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaatcctagaatagaagctgttttctgcatgaaatcaattctgtaaa 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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