Query= MSMg01no516_a18.b1 MSMg01no516_a18.b1 CHROMAT_FILE:
MSMg01no516_a18.b1 PHD_FILE: MSMg01no516_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(186 letters)
>mm_chr11_92937587_92938171
Length = 585
Score = 315 bits (163), Expect = 9e-91
Identities = 178/183 (97%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtaaggttcaaagactcagtatcactccattatttttaaatgctaattagct 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtaaggtagaaagactcagtatcactccattatttttaaatgctaattagct 263
Query: 64 tataacctaccaggtttcactgtgatatttcatacacacttcattttnggttgaggccac 123
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 tatagcctaccaggtttcactgtgatatttcatacacacttcatttt-ggttgaggccac 322
Query: 124 tcccccattcctcttccccacctcctgccctgactcgcttacacctctctgctcactccc 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 tcccccattcctcttccccacctcctgccctgattcgcttacacctctctgctcactccc 382
Query: 184 ttc 186
|||
Sbjct: 383 ttc 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 585
Length adjustment: 8
Effective length of query: 178
Effective length of database: 577
Effective search space: 102706
Effective search space used: 102706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no516_a18.g1 MSMg01no516_a18.g1 CHROMAT_FILE:
MSMg01no516_a18.g1 PHD_FILE: MSMg01no516_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(595 letters)
>mm_chr11_93098039_93099035
Length = 997
Score = 1081 bits (559), Expect = 0.0
Identities = 587/597 (98%), Gaps = 2/597 (0%)
Strand = Plus / Minus
Query: 1 tctaagcaatgagaagggtaaacagaaaaataatctctaagcaatatccaaggctcacag 60
||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 797 tctaagcaatgagaaggctaagcagaataataatctctaagcaatatccaaggctcacag 738
Query: 61 agataaaatggagcaaagtaccatcagagacactcacctagggattggctcccctactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agataaaatggagcaaagtaccatcagagacactcacctagggattggctcccctactgg 678
Query: 121 ttcactatgaatttccaggctttgcctcagaatctgcttagtcatcaagtacggggctct 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 677 ttcactatgaatttccaggctttgcctcagaatcagcttagtcatcaagtacggggctct 618
Query: 181 ttaggggactttgctaattgtacatatacgtatgcttcacctggactagaagtgttttga 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttaggggactttgttaattgtacatatacgtatgcttcacctggactagaagtgttttga 558
Query: 241 ctgattgggacagtagctatcaaggactcctcctcgatggacaattctgttatcagattt 300
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 557 ctgattgagacagtagctatcaaggactcctcctcgatggaaaattctgttatcagattt 498
Query: 301 cccaaggattgggtagcagaagtataggctgtagatttattctgttgccatggcaatgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cccaaggattgggtagcagaagtataggctgtagatttattctgttgccatggcaatgat 438
Query: 361 aaacttcccctaaaaattctcttgtatccccataaacccttggtttaggagaaggcattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaacttcccctaaaaattctcttgtatccccataaacccttggtttaggagaaggcattt 378
Query: 421 taaaatacagtaatctcttagctctacttaggcacactccctagacacatgagagaataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taaaatacagtaatctcttagctctacttaggcacactccctagacacatgagagaataa 318
Query: 481 cggcctaggaaagggcatatcgtaaaaca--ctggcttttagcattacggcatgggaaaa 538
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 317 cggcctaggaaaaggcatatcgtaaaacagactggcttttagcattacggcatgggaaaa 258
Query: 539 cattggccaatgaagtagggaaggaaagagtaaatatatttgagccgtcaatgagaa 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cattggccaatgaagtagggaaggaaagagtaaatatatttgagccgtcaatgagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 997
Length adjustment: 10
Effective length of query: 585
Effective length of database: 987
Effective search space: 577395
Effective search space used: 577395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
