NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAACATCTAATTCAACATCTAATTCAACATCAACATCATTC
AAAGCCACACAGTGAGTGTGAGGCTAGCCTGGGATATATGAGATTCTGCC
TCAAACAAAACAAATTGGAGGGAAGGGGGAGGAATAAGTTACAAGTATAC
ACAAAATAAGAGAGAAGTTGTAAAAAGTAATTTGCAAGTACATGATGGAG
TTCAAGAGAGCTCCCAAACTGGAGCTGAGCTGGGCTGGTGAACTGAGGGA
AGACAGAAAATTGTTCCTAAATCCACAAGGGAGGAGCCGGGCAGTAGTGG
CGCACGGCTTTAATCCCAGCACTCGGGAGGCAAAGGCAGGCGGATTTCTG
AGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT
ACACAGAGAAATCCTGTCTCAAAAAAACAAACAAACAAATAAATCTTTTT
TTTTTAAGACAAAGCATTCATTCATATATTCATATATATATATATATATA
TAATACATAAATAAATCTTTTAAAGAAGAAAAGAAAAATCAAAACCCACA
CACCCTGTAAGGACAAAGCTGCAGGGTTCTCTTTCCAGTCTTGGTTTTGA
CCTGCATTATTTTCTAGTTTGCTACAGAGAAAGAATAATGAAATAAGAAC
ATACTTCTCACAGTTTATAATGAATTTAGTGAAACCGAATGGAAATTAGC
ATGGAAN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCCTCTGAAGAAACAGACTGGGAGGAAGAAGCAGCTCATTATGAGAAA
AAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAA
AGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTC
AAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTGC
GCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGACTCATTCATTCCCAG
AGAGGAACAAAGGAAAATACAACAGGCATTTCCGGTCTTTGAAGGAGCCG
AGGGTGGGCGTGTCCACGCTCCGGTAGAATACTTACAAATTAAAGAACTT
GCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGGTGCA
GTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGCCGACTGGCAAACGG
TTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCG
CTTTGGCATGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTGCTTT
GACTCCAGAGCAGAGAGATTGTACTTTTGAGTTGTTAACGGGTCAGGGAG
CTTATTCTGC

Query= MSMg01no516_h04.b1 MSMg01no516_h04.b1 CHROMAT_FILE:
MSMg01no516_h04.b1 PHD_FILE: MSMg01no516_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:11 2005
         (688 letters)



>mm_chr11_3064519_3065606
          Length = 1088

 Score = 1180 bits (610), Expect = 0.0
 Identities = 646/668 (96%), Gaps = 17/668 (2%)
 Strand = Plus / Plus

                                                                       
Query: 18  aattcaacatctaattcaacatcaacatcattcaaagccacacagtgagtgtgaggctag 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aattcaacatctaattcaacatcaacatcattcaaagccacacagtgagtgtgaggctag 277

                                                                       
Query: 78  cctgggatatatgagattctgcctcaaacaaaacaaattggagggaagggggaggaataa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cctgggatatatgagattctgcctcaaacaaaacaaattggagggaagggggaggaataa 337

                                                                       
Query: 138 gttacaagtatacacaaaataagagagaagttgtaaaaagtaatttgcaagtacatgatg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gttacaagtatacacaaaataagagagaagttgtaaaaagtaatttgcaagtacatgatg 397

                                                                       
Query: 198 gagttcaagagagctcccaaactggagctgagctgggctggtgaactgagggaagacaga 257
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gagttcaagagagctcccgaactggagctgagctgggctggtgaactgagggaagacaga 457

                                                                       
Query: 258 aaattgttcctaaatccacaagggaggagccgggcagtagtggcgcacggctttaatccc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 458 aaattgttcctaaatccacaagggaggagccgggcagtagtggcgcacgcctgtaatccc 517

                                                                       
Query: 318 agcactcgggaggcaaaggcaggcggatttctgagtttgaggccagcctggtctacagag 377
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agcactagggaggcaaaggcaggcggatttctgagtttgaggccagcctggtctacagag 577

                                                                       
Query: 378 tgagttccaggacagccagggctacacagagaaatcctgtctcaaaaaaacaaacaaaca 437
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 578 tgagttccaggacagccagggctacacagagaaatcctgtctcgaaaaaacaaacaaaca 637

                                                                       
Query: 438 aataaatcttttttttttaa-gacaaagcattcattcatatattcatatatatatatata 496
           |||||||||||||||||||| ||||||||||||||||||||||                |
Sbjct: 638 aataaatcttttttttttaaagacaaagcattcattcatatat----------------a 681

                                                                       
Query: 497 tatataatacataaataaatcttttaaagaagaaaagaaaaatcaaaacccacacaccct 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatataatacataaataaatcttttaaagaagaaaagaaaaatcaaaacccacacaccct 741

                                                                       
Query: 557 gtaaggacaaagctgcagggttctctttccagtcttggttttgacctgcattattttcta 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gtaaggacaaagctgcagggttctctttccagtcttggttttgacctgcattattttcta 801

                                                                       
Query: 617 gtttgctacagagaaagaataatgaaataagaacatacttctcacagtttataatgaatt 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gtttgctacagagaaagaataatgaaataagaacatacttctcacagtttataatgaatt 861

                   
Query: 677 tagtgaaa 684
           ||||||||
Sbjct: 862 tagtgaaa 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)