Query= MSMg01no516_j13.b1 MSMg01no516_j13.b1 CHROMAT_FILE:
MSMg01no516_j13.b1 PHD_FILE: MSMg01no516_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:23 2005
(704 letters)
>mm_chr11_112617750_112618853
Length = 1104
Score = 1346 bits (696), Expect = 0.0
Identities = 699/700 (99%)
Strand = Plus / Minus
Query: 5 gaattcttcttttctctttgcctctaatactgcttcgctctgaccctcaaaacccttctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gaattcttcttttctctttgcctctaatactgcttcgctctgaccctcaaaacccttctg 845
Query: 65 aaagccagtgtatattaccttatgactttatagttcagtgaaggtatatattttgattcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aaagccagtgtatattaccttatgactttatagttcagtgaaggtatatattttgattcc 785
Query: 125 tgagccagctggtgagctagccagggcagcatcacggtgctcgtaggatttagttgtgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgagccagctggtgagctagccagggcagcatcacggtgctcgtaggatttagttgtgaa 725
Query: 185 ctcctgtgcattcaattgtcagttttaaggctttttctttttgttcagtcttctgtttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctcctgtgcattcaattgtcagttttaaggctttttctttttgttcagtcttctgtttaa 665
Query: 245 ttcttgcacagtttagatatgtttacaaacacagacttagaagagcgaggagagttccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttcttgcacagtttagatatgtttacaaacacagacttagaagagcgaggagagttccca 605
Query: 305 aggggatataggtgcatgttacatcactgatattctgtcttgtgctgaccccaaatgatg 364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggggatataggtgcgtgttacatcactgatattctgtcttgtgctgaccccaaatgatg 545
Query: 365 cacattcaaccacctgagtttcccgaggtcccttctggcagcaaattcctttgtttcatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cacattcaaccacctgagtttcccgaggtcccttctggcagcaaattcctttgtttcatt 485
Query: 425 ggcctttggggccctaatctccccaccagggtcgagtcatctattgtccacctaagctca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggcctttggggccctaatctccccaccagggtcgagtcatctattgtccacctaagctca 425
Query: 485 gctggggatataattaccagtagggtttgtgattaagggttttggtggttgcttttttga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gctggggatataattaccagtagggtttgtgattaagggttttggtggttgcttttttga 365
Query: 545 tctcttccctgaactaattaagcctggacaaagcaaggccatgaattcattaaaggggca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tctcttccctgaactaattaagcctggacaaagcaaggccatgaattcattaaaggggca 305
Query: 605 gacactgattgagtccctctccaattttaggcaccgtgctgatatggctggcagtaaccc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gacactgattgagtccctctccaattttaggcaccgtgctgatatggctggcagtaaccc 245
Query: 665 cacctccccacccccagaactgatagagcaaatgactaga 704
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cacctccccacccccagaactgatagagcaaatgactaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no516_j13.g1 MSMg01no516_j13.g1 CHROMAT_FILE:
MSMg01no516_j13.g1 PHD_FILE: MSMg01no516_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:23 2005
(249 letters)
>mm_chr11_112541346_112541993
Length = 648
Score = 433 bits (224), Expect = e-126
Identities = 242/248 (97%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 1 tctcttttctatgattaaatttagtctctggcaatttcatacatgacacagcatctctca 60
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 201 tctcttttctatgattaaatttag-ctccggcaatttcatacatgacacagcatctctca 259
Query: 61 gtgcagcaggagtccatgagtctgctcacctgggtggccagttctgcttccaccttgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 gtgcagcaggagtccatgagtctgctcacctgggtggccagttctgcttacaccttgtag 319
Query: 121 ctggtctttgctaccttgggggttcttcttgccaccctttatccccctaatttcatgccg 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 320 ctggtctttgctaccttgggggttctttttgccaccctttatccccctaatttcatgcca 379
Query: 181 tactactagataggtgagaaaggagagagagagagagagagagagagagagagagagaga 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taccactagataggtgagaaaggagagagagagagagagagagagagagagagagagaga 439
Query: 241 gagagaga 248
||||||||
Sbjct: 440 gagagaga 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space: 153360
Effective search space used: 153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
