BAC Information

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BAC

Clone NameMSMg01-516O13
Chromosome11 (Build37)
Map Location 68,229,262 - 68,403,670
singlet/doubletdoublet
Overlap genePik3r5, BB220380, BC024997
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
Downstream geneCcdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516O13.T7 (MSMg01no516_o13.b1)MSMg01-516O13.TJ (MSMg01no516_o13.g1)
ACCAG588791AG588792
length736743
length of high quality
(start - end)		590 (52 - 641)661 (83 - 743)
definitionCHROMAT_FILE: MSMg01no516_o13.b1 PHD_FILE: MSMg01no516_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:49 2005CHROMAT_FILE: MSMg01no516_o13.g1 PHD_FILE: MSMg01no516_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,229,262 - 68,229,846)(68,403,011 - 68,403,670)
sequence
TTCTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAATATGTGTTCTATTGTGGTCTTGGGGGAGGGTCTTT
ATTTCACTTAGAATAAGCTGTAAAGTTCATTTATGTTATATCTTGTTCCT
GGCATTTATTTATTTACTGGTTTTTTTTGTTTGTTTGTTTGTTTTTTTTT
TGTTTTTTTGAGACAGTGTTTCTCTGTGTAACAGTCCTGGCTGTCCTGAG
ACTCAACTCTATAGACCAGGTTGGCCTCAAACTTACAGACAGCCCCCTGC
CTCTGCCTCCCAAGTGCTAGGATGTACCATCACTGCCTGGGTCTTGATTT
TATTTTTTGAAAATTTGTTTTTATTTATTATTATTTTTCATTTTATATAT
ATGAATATTTAATATGTGTACTATGCCTGGTGCCCACAGAAGCCAGAGAC
AATCAGATGCTCTGCCACTGGTGTTACAGACAGTGGTAAGCTGCCACATG
GGTGCTGGGAATTGAACCTGCATCCTCTGGAAGGGCAATCAGTGCTCTTA
ACCACTAAGTCATCTCTCCAGCCTGTTGATTGAAGCTGGTCTATTCTAGA
CCAGCATCCTATCAATCATGCTACGTGTCTTCTTGTGAGATTGTTTCAAG
GCTTTTCAGGTATCTTATTTGTGGCTAATGGAGTCCCAGTGTTCCTTTCC
TAAGAGGTTTTTATTTTTTCCCAAACTGGTCATTGG

NNNCCCCTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACGCAGGAGGGATGA
GGCTCAGCTACTGACCCTGCCTCTTCTTTTTGCAGCATCAGGACCAGTGC
AAGTCAACCCCTTGCACTTGACCAGGTGTCACCAGGTGTCTCTTTTCTCC
TGTCATGGGCCCCCATGATTCCTCATGGATGAACAAGGATAGTGGGGACA
TTTAGGGGGGATGGAGAGACGCACCAGATATGTGCCCTGCTCCAAAGCAC
CAGAGAGGCCCGGGGGATCCCAAATCAGTCATATATGAATCACCTAGAAA
GTTTTTAAACACCTATAGGTGTCTGGTCTCAACCTGAGACCTGCTAGAGG
CAGAAGAAGGAAGAAGTTACCAGCGTCTGTATTTGTGAAGAGTACCATGA
GATTCCACAGCTTCTGACTTCCTGGAAGTCATTTGGAGAGTCCTTCACTC
TCAGACTTCCTGTCCTCTTCAATACTCCATCAACTTTGCTCTGGTCCAGG
AGGACTGTATCTCAGAACACTGACATCCCTGCTCTGCCCAGTTGTGCATA
GAATGAGGGACCTTACAAGTAGGGTTCCTCCAGGAGAGGGCAGCAGTGAG
CTCTCCTTGCAACAGCTCCCAACTCCTCAGGACTTCTCTACTGCTGGTCC
TGGAGCATTGCTGGCCAACAAGTCTGAGTGAGGCTTTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_o13.b1 MSMg01no516_o13.b1 CHROMAT_FILE:
MSMg01no516_o13.b1 PHD_FILE: MSMg01no516_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:49 2005
         (590 letters)



>mm_chr11_68229059_68230049
          Length = 991

 Score = 1087 bits (562), Expect = 0.0
 Identities = 581/588 (98%), Gaps = 4/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattca-caatatgtgttctattgtggtcttgggggagggtctttatttcacttagaa 62
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacaatatgtgttctattgtggtcttgggggagggtctttatttcacttagaa 263

                                                                       
Query: 63  taagctgtaaagttcatttatgttatatcttgttcctggcatttatttatttactggttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagctgtaaagttcatttatgttatatcttgttcctggcatttatttatttactggttt 323

                                                                       
Query: 123 tttttgtttgtttgtttgttttttttttgtttttttgagacagtgtttctctgtgtaaca 182
           |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttgtttgtttgttt--tgtttttttgtttttttgagacagtgtttctctgtgtaaca 381

                                                                       
Query: 183 gtcctggctgtcctgagactcaactctatagaccaggttggcctcaaacttacagacagc 242
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtcctggctgtcctgggactcaactctatagaccaggttggcctcaaacttacagacagc 441

                                                                       
Query: 243 cccctgcctctgcctcccaagtgctaggatgtaccatcactgcctgggtcttgattttat 302
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccc-tgcctctgcctcccaagtgctaggatgtaccatcactgcctgggtcttgattttat 500

                                                                       
Query: 303 tttttgaaaatttgtttttatttattattatttttcattttatatatatgaatatttaat 362
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tttttgaaaatttgtttttatttattattatttttcattttatacatatgaatatttaat 560

                                                                       
Query: 363 atgtgtactatgcctggtgcccacagaagccagagacaatcagatgctctgccactggtg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgtactatgcctggtgcccacagaagccagagacaatcagatgctctgccactggtg 620

                                                                       
Query: 423 ttacagacagtggtaagctgccacatgggtgctgggaattgaacctgcatcctctggaag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacagacagtggtaagctgccacatgggtgctgggaattgaacctgcatcctctggaag 680

                                                                       
Query: 483 ggcaatcagtgctcttaaccactaagtcatctctccagcctgttgattgaagctggtcta 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcaatcagtgctcttaaccactaagtcatctctccagcctgttgattgaagctggtcta 740

                                                           
Query: 543 ttctagaccagcatcctatcaatcatgctacgtgtcttcttgtgagat 590
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctagaccagcatcctatcaatcatgctacgtgtcttcttgtgagat 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_o13.g1 MSMg01no516_o13.g1 CHROMAT_FILE:
MSMg01no516_o13.g1 PHD_FILE: MSMg01no516_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:49 2005
         (661 letters)



>mm_chr11_68402811_68403871
          Length = 1061

 Score = 1253 bits (648), Expect = 0.0
 Identities = 657/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcacgcaggagggatgaggctcagctactgaccctgcctcttctttttgcagcatcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 860 tgcacgcaggagggatgaggctcagctactgaccctgcctcttctttctgcagcatcagg 801

                                                                       
Query: 61  accagtgcaagtcaaccccttgcacttgaccaggtgtcaccaggtgtctcttttctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 accagtgcaagtcaaccccttgcacttgaccaggtgtcaccaggtgtctcttttctcctg 741

                                                                       
Query: 121 tcatgggcccccatgattcctcatggatgaacaaggatagtggggacatttaggggggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcatgggcccccatgattcctcatggatgaacaaggatagtggggacatttaggggggat 681

                                                                       
Query: 181 ggagagacgcaccagatatgtgccctgctccaaagcaccagagaggcccgggggatccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 ggagagacgcaccagatatgtgccctgctccaaagcaccagagaggcccggggaatccca 621

                                                                       
Query: 241 aatcagtcatatatgaatcacctagaaagtttttaaacacctataggtgtctggtctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatcagtcatatatgaatcacctagaaagtttttaaacacctataggtgtctggtctcaa 561

                                                                       
Query: 301 cctgagacctgctagaggcagaagaaggaagaagttaccagcgtctgtatttgtgaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctgagacctgctagaggcagaagaaggaagaagttaccagcgtctgtatttgtgaagag 501

                                                                       
Query: 361 taccatgagattccacagcttctgacttcctggaagtcatttggagagtccttcactctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taccatgagattccacagcttctgacttcctggaagtcatttggagagtccttcactctc 441

                                                                       
Query: 421 agacttcctgtcctcttcaatactccatcaactttgctctggtccaggaggactgtatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agacttcctgtcctcttcaatactccatcaactttgctctggtccaggaggactgtatct 381

                                                                       
Query: 481 cagaacactgacatccctgctctgcccagttgtgcatagaatgagggaccttacaagtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaacactgacatccctgctctgcccagttgtgcatagaatgagggaccttacaagtag 321

                                                                       
Query: 541 ggttcctccaggagagggcagcagtgagctctccttgcaacagctcccaactcctcagga 600
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 ggttcctccaggagagggcagcagtgagccctccttgcaacagctcccaactcctcagga 261

                                                                       
Query: 601 cttctctactgctggtcctggagcattgctggccaacaagtctgagtgaggcttttgttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttctctactgctggtcctggagcattgctggccaacaagtctgagtgaggcttttgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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