BAC Information

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BAC

Clone NameMSMg01-518J02
Chromosome11 (Build37)
Map Location 70,506,920 - 70,507,598
singlet/doubletsinglet
Overlap geneAI842396
Upstream geneTnfsf12-tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2
Downstream geneKif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518J02.T7 (MSMg01no518_j02.b1)MSMg01-518J02.TJ (MSMg01no518_j02.g1)
ACCAG590046AG590047
length743848
length of high quality
(start - end)		683 (53 - 735)---
definitionCHROMAT_FILE: MSMg01no518_j02.b1 PHD_FILE: MSMg01no518_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:00 2005CHROMAT_FILE: MSMg01no518_j02.g1 PHD_FILE: MSMg01no518_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTTGTTTGATTGTTTTTGAAGTGGGGTCTTACACAGT
TTAGGCGCGCCTCAAACTTACTATGTAGACAAGGATGGCTTTCCACTTCT
GATCCTGTCATCATCCCCAAGTGCTTAGATTACACACATGTACCAGGGGG
TGTTGAATCTCCTAAAGCTGAAGTCAACAGGCAGTTGTATGCTACCTGAT
GTGGGTTCGGGGAAGTGAATGCTCTTAACCACTGAGCCAATGTGATACCA
CTTTAAAAGTCTCAGTGGACTCAGGAGGCAGAGACAACGAAAGAACAGAT
TACTCTCTCCTCCTCTGTGTAGTAGCATCTGGGGAGGAAATAAGAATAGA
AGCGGGGGCTGGAGAGAAGGCTCAGCAGTTAAGACCACTTGTTCTTGCAG
AGAATCTGGGTTCAGTTCCCAATACCCACATGGCAGCTAAGAACCATCTG
TCACTCCAGGTCTAGAGGATCCAATGCCCTCTTCCATTGTCTGTGGGCAA
TGTACAAATGTGGTGCTCAGACATACATGCAGGTAGCATATCAATACATA
TAAAGTAAAACATACTTTTTGGTTTTTTTTTGTTTTTCAAGACAGTGTAG
CCCTGGCTGTCCTGGAATTCACTCTGTAGATCAGGCTGGCCTCGAACTCA
GAAATCCACCTGCCTCTGCTCCCCAAGTGCTGGGATTAAAGGN

TTTTTACTTCCCGCAGCCACCGCCGGGTGGTGTCTTTCTAAACACGGGGG
GGGGTGTTTTTTTCTCAAAAAACGGTGGTGCTAGTTAGTGTACATTTGAA
GTCCCAAGCCCCTGGTTCAAAAAGCAAAAATAGAAGAATCATATAAGTCA
TGGACAACACGGCCGGAGAGAGGGGCGCAAGCGAAAAACATCTGGACGCA
CATCCGGCCCCCGCCCCCAATAAGAATTAATGTACGCTAAACCACCATAA
GTGCTCCCAAAAGTCGTTTTGTGCTTGACGCCATTTCCTTTAGAGCATTT
ATGGCGGGCGGCGCACAGGGAAACGAGCCACGATTTATTCCTGAAGGCGG
GCTCTGACTACCCACACCCGCTCCCAGTGTCCTGCTAGCTCTGCTTAATC
TTCTCCTCCCCCTTCCTTCCTATTTTGTTGCGTCTAACGTATCTTCCCAA
CACTTACTAAAAAAACAAATAAAAGGCCCACGACAATCCCTTCTTTAGTT
CACTATAATATCCCATCTATAAATCTCCCCTATTGTCTTTCTGATCTTAT
TCATATGTCCCCTTATCCCCTTAGCGTGGTAATCCATTGTCTCAATAGTG
ACTTAATCAGATACCCTGCCCTCATAAGTCTCCCTTTTTCCTTCCATCAT
ATCCCCCAATTTTTTTTTCTTCTTTCTCCCCCCTATTCCTCAATATTCTC
AAATTTTCCCCTTTCTTGTCTTTTTTTTCCTAATATGTATCCCCACTCTC
TCCTCTTTTCCCTCTATTCTATTTCCGCTGTTATTCCTCCTCTTTTTATG
TGCCCACCCTTCACCCCTTTCACACCTTTTTTATTCCTCTTAGATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_j02.b1 MSMg01no518_j02.b1 CHROMAT_FILE:
MSMg01no518_j02.b1 PHD_FILE: MSMg01no518_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:00 2005
         (683 letters)



>mm_chr11_70506814_70507896
          Length = 1083

 Score = 1292 bits (668), Expect = 0.0
 Identities = 677/680 (99%), Gaps = 2/680 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttgtttgattgtttttgaagtggggtcttacacagtttaggcgcgcctcaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaattcctttgtttgattgtttttgaagtggggtcttacacagtttaggcgcgcctcaaa 726

                                                                       
Query: 65  cttactatgtagacaaggatggctttccacttctgatcctgtcatcatccccaagtgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttactatgtagacaaggatggctttccacttctgatcctgtcatcatccccaagtgctt 666

                                                                       
Query: 125 agattacacacatgtaccagggggtgttgaatctcctaaagctgaagtcaacaggcagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agattacacacatgtaccagggggtgttgaatctcctaaagctgaagtcaacaggcagtt 606

                                                                       
Query: 185 gtatgctacctgatgtgggttcggggaagtgaatgctcttaaccactgagccaatgtgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gtatgctacctgatgtgggttcggggaagtgaatgctcttaaccactgagccaatgtgat 546

                                                                       
Query: 245 accactttaaaagtctcagtggactcaggaggcagagacaacgaaagaacagattactct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 accactttaaaagtctcagtggactcaggaggcagagacaacgaaagaacagattactct 486

                                                                       
Query: 305 ctcctcctctgtgtagtagcatctggggaggaaataagaatagaagcgggggctggagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctcctcctctgtgtagtagcatctggggaggaaataagaatagaagcgggggctggagag 426

                                                                       
Query: 365 aaggctcagcagttaagaccacttgttcttgcagagaatctgggttcagttcccaatacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaggctcagcagttaagaccacttgttcttgcagagaatctgggttcagttcccaatacc 366

                                                                       
Query: 425 cacatggcagctaagaaccatctgtcactccaggtctagaggatccaatgccctcttcca 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cacatggcagctaaaaaccatctgtcactccaggtctagaggatccaatgccctcttcca 306

                                                                       
Query: 485 ttgtctgtgggcaatgtacaaatgtggtgctcagacatacatgcaggtagcatatcaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgtctgtgggcaatgtacaaatgtggtgctcagacatacatgcaggtagcatatcaata 246

                                                                       
Query: 545 catataaagtaaaacatactttttggttttttttt-gtttttcaagacagtgtagccctg 603
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 245 catataaagtaaaacatacttttt-gtttttttttggtttttcaagacagtgtagccctg 187

                                                                       
Query: 604 gctgtcctggaattcactctgtagatcaggctggcctcgaactcagaaatccacctgcct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gctgtcctggaattcactctgtagatcaggctggcctcgaactcagaaatccacctgcct 127

                               
Query: 664 ctgctccccaagtgctggga 683
           ||||||||||||||||||||
Sbjct: 126 ctgctccccaagtgctggga 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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