BAC Information

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BAC

Clone NameMSMg01-519B11
Chromosome11 (Build37)
Map Location 96,892,963 - 97,089,374
singlet/doubletdoublet
Overlap geneScrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps
Upstream geneSnf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6
Downstream geneEG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519B11.T7 (MSMg01no519_b11.b1)MSMg01-519B11.TJ (MSMg01no519_b11.g1)
ACCAG590446AG590447
length721723
length of high quality
(start - end)		659 (42 - 700)646 (74 - 719)
definitionCHROMAT_FILE: MSMg01no519_b11.b1 PHD_FILE: MSMg01no519_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:42 2005CHROMAT_FILE: MSMg01no519_b11.g1 PHD_FILE: MSMg01no519_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,892,963 - 96,893,618)(97,088,729 - 97,089,374)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CACAGTTCTTAGCTTGGCAACTATATGGTTTATTATTGTTTTTTCATGTT
TGTTTGTTTTTGTTTTATTTTATGTTTTGAGACAGGGTCTCACTGCATAA
CCCTGACTGGCTTAGAATTCACTATGTAGACCAGGCTAGCCTCAAACTCA
CAGAGATCTGCCCGCCTCCCAAGTGCTGGGGTTGAAAGTGTGTACCACTA
CTCCAGCTGATTTTTCACTTTGCTTTGGTATTTTTGTTTGTTTGTTTTAA
GAGATCATGTAGTATGTAGCTGAGTCCAGAGATGAACTTCTGATCTCCCT
GCCTCCACTCCGGAGGAATCACAGGCCTGGCCTGCATGATTGTTTAATAC
CATCATGGCTGCTGGGTTTGCTGTGCTACGTGGGCTTTTCATCAAACCCG
TGTGGACCGCTTCTGTACTCTGATTTTCTATCAGGCTGGCTTTGGAACGG
AGCAGCACTGCCCAGGAGGCTGTTCACGTGATTGCAGGCTTGCTGGACCG
CTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCAGAGCCGTTCTGCTATC
ACAACACCTTTTTACTGGCTGATCGGACAGAGGCGTGGGTGCTGGAGACA
GCTGGGAGCCTGTGGGCTGCTCAGCGGATCCAGGGTAGGAGTCTAGCGTA
GAGCCTGCCTCCAAGAGGGAA

ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATAAGATTGTGGAAGTCCCTCACTT
TGTCCTCCCAACTGCTGCCACCTTCCTGAATAACTCTGCATGTCATCAAA
CCCTTTCTACCTATAAAGTTTTAACCAGGCAATTTAATTTTTATTGAAGA
AACTTAAGTTTCATTTTCTTTAGAATAGTAGTCTCAGTAGGGAGAGATAT
GTGTACCTGCCACTTTGTCACCACTGTCCTGTCATGTTGTGTTCACAAGA
TCCAGTAAAGAAAAATGGCCTTCTGCTCTTCACTGTCTCACTTTGAACTA
CTCTTCTCAGTAGGGGCCATGGATTTGATCTCCAGCATTCCTTGCCTAAT
GGGAAAAAGAAGTCTAACATGTCAGTTTATGGCTTTACTCGCCAATTAAG
TCTTTAAGTGCCACAATTTCTATTTTCTCCCTCATATTTATAATCTGTGT
TGTAATACTAACAGGTTTGCAGGTTTTTCTATCCCTAAGACCAATGCAGG
TGACATTAAAACCTTGGGTATCTCAGTGATTTAACATTCAGCTTAGGGCT
GGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT
GAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAG
ATCTGATGCCCTCTTCTGGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_b11.b1 MSMg01no519_b11.b1 CHROMAT_FILE:
MSMg01no519_b11.b1 PHD_FILE: MSMg01no519_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:42 2005
         (659 letters)



>mm_chr11_96892760_96893818
          Length = 1059

 Score = 1261 bits (652), Expect = 0.0
 Identities = 655/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagttcttagcttggcaactatatggtttattattgttttttcatgtttgtt 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagtccttagcttggcaactatatggtttattattgttttttcatgtttgtt 263

                                                                       
Query: 64  tgtttttgttttattttatgttttgagacagggtctcactgcataaccctgactggctta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtttttgttttattttatgttttgagacagggtctcactgcataaccctgactggctta 323

                                                                       
Query: 124 gaattcactatgtagaccaggctagcctcaaactcacagagatctgcccgcctcccaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattcactatgtagaccaggctagcctcaaactcacagagatctgcccgcctcccaagt 383

                                                                       
Query: 184 gctggggttgaaagtgtgtaccactactccagctgatttttcactttgctttggtatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctggggttgaaagtgtgtaccactactccagctgatttttcactttgctttggtatttt 443

                                                                       
Query: 244 tgtttgtttgttttaagagatcatgtagtatgtagctgagtccagagatgaacttctgat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtttgtttgttttaagagatcatgtagtatgtagctgagtccagagatgaacttctgat 503

                                                                       
Query: 304 ctccctgcctccactccggaggaatcacaggcctggcctgcatgattgtttaataccatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctccctgcctccactccggaggaatcacaggcctggcctgcatgattgtttaataccatc 563

                                                                       
Query: 364 atggctgctgggtttgctgtgctacgtgggcttttcatcaaacccgtgtggaccgcttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggctgctgggtttgctgtgctacgtgggcttttcatcaaacccgtgtggaccgcttct 623

                                                                       
Query: 424 gtactctgattttctatcaggctggctttggaacggagcagcactgcccaggaggctgtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtactctgattttctatcaggctggctttggaacggagcagcactgcccaggaggctgtt 683

                                                                       
Query: 484 cacgtgattgcaggcttgctggaccgctatgggcagggaggcagctgccgggaggatcca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacgtgattgcaggcttgctggaccgctatgggcagggaggcagctgccgggaggatcca 743

                                                                       
Query: 544 gagccgttctgctatcacaacacctttttactggctgatcggacagaggcgtgggtgctg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gagccgttctgctatcacaacacctttttactggctgatcggacagaggcgtgggtgctg 803

                                                                   
Query: 604 gagacagctgggagcctgtgggctgctcagcggatccagggtaggagtctagcgta 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gagacagctgggagcctgtgggctgctcagcggatccagggtaggagtctagcgta 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_b11.g1 MSMg01no519_b11.g1 CHROMAT_FILE:
MSMg01no519_b11.g1 PHD_FILE: MSMg01no519_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:42 2005
         (646 letters)



>mm_chr11_97088653_97089698
          Length = 1046

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataagattgtggaagtccctcactttgtcctcccaactgctgccaccttcctgaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aaataagattgtggaagtccctcactttgtcctcccaactgctgccaccttcctgaataa 663

                                                                       
Query: 61  ctctgcatgtcatcaaaccctttctacctataaagttttaaccaggcaatttaattttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctctgcatgtcatcaaaccctttctacctataaagttttaaccaggcaatttaattttta 603

                                                                       
Query: 121 ttgaagaaacttaagtttcattttctttagaatagtagtctcagtagggagagatatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttgaagaaacttaagtttcattttctttagaatagtagtctcagtagggagagatatgtg 543

                                                                       
Query: 181 tacctgccactttgtcaccactgtcctgtcatgttgtgttcacaagatccagtaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacctgccactttgtcaccactgtcctgtcatgttgtgttcacaagatccagtaaagaaa 483

                                                                       
Query: 241 aatggccttctgctcttcactgtctcactttgaactactcttctcagtaggggccatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatggccttctgctcttcactgtctcactttgaactactcttctcagtaggggccatgga 423

                                                                       
Query: 301 tttgatctccagcattccttgcctaatgggaaaaagaagtctaacatgtcagtttatggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttgatctccagcattccttgcctaatgggaaaaagaagtctaacatgtcagtttatggc 363

                                                                       
Query: 361 tttactcgccaattaagtctttaagtgccacaatttctattttctccctcatatttataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttactcgccaattaagtctttaagtgccacaatttctattttctccctcatatttataa 303

                                                                       
Query: 421 tctgtgttgtaatactaacaggtttgcaggtttttctatccctaagaccaatgcaggtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctgtgttgtaatactaacaggtttgcaggtttttctatccctaagaccaatgcaggtga 243

                                                                       
Query: 481 cattaaaaccttgggtatctcagtgatttaacattcagcttagggctggagagatggctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||
Sbjct: 242 cattaaaaccttgggtatctcagtgatttaacattcagcttagggctagagagatgattc 183

                                                                       
Query: 541 agtggttaagagcactgactgctcttccagaggtcctgagttcaattcccagcaaccaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agtggttaagagcactgactgctcttccagaggtcctgagttcaattcccagcaaccaca 123

                                                         
Query: 601 tggtggctcacagccatctgtaatgagatctgatgccctcttctgg 646
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 122 tggtggctcacagccatctgtaatgggatctgatgccctcttctgg 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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