Query= MSMg01no520_b08.b1 MSMg01no520_b08.b1 CHROMAT_FILE:
MSMg01no520_b08.b1 PHD_FILE: MSMg01no520_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:01 2005
(610 letters)
>mm_chr11_63442714_63443723
Length = 1010
Score = 845 bits (437), Expect = 0.0
Identities = 501/533 (93%), Gaps = 20/533 (3%)
Strand = Plus / Minus
Query: 89 tttttttttagacagtcttactctggaacttactgtgcaggtcttttttttttttttttt 148
||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1010 ttttttttt-gacagtcttactctggaacttactgtgcagctc--------ttttttttt 960
Query: 149 tttt--gagaca---------gggtttctctgtggagtcctggctgtcctggcactcact 197
|||| || | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ttttccgaaaaaaaaaagggggggtttctctgtggagtcctggctgtcctggcactcact 900
Query: 198 ctgtagaccaggctggcctcgaactcggaaattcgcctgcctctgcctcccaagtgctgg 257
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 899 ctgtagaccaggctggcctcgaactcggaaattcgcctgcctctgccgcccaagtgctgg 840
Query: 258 gattaaaggcgtgcgccaccacacccagccacactcaactcttaattttggcttacaatt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gattaaaggcgtgcgccaccacacccagccacactcaactcttaattttggcttacaatt 780
Query: 318 acctttctctttgtaatccctccttgccatcccttcctcgtactcatgaggttattggct 377
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 779 tcctttctctttgtaatccctccttgccatcccttcctcatactcatgaggttattggct 720
Query: 378 tagcccacatacccctcaatatgaacattaaaaatactctggcccttgagtgtctcctgc 437
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 719 tagcccacatacccctcaatatgaacattaaaaatgctctggcccttgagtgtctcctgc 660
Query: 438 agggctccattaggcaggacatgcagtgctatgatagtcaggagttagagtgaatcccta 497
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 659 agggctccatcaggcaggacatgcagtgctatgacagtcaggagttagagtgaatcccta 600
Query: 498 ccttcaaattgccagctgctctgccaagccacttaacctttgggtatccctgctctctcc 557
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 599 ccttcaaattgccagctgctctgccaagccacttagcctttgggtatccctgctctctcc 540
Query: 558 tagctgtaacttggaatgagtttaatggcatcacctcaaatcctaatgggacc 610
|||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 539 tagctgtaacttggaatgagtttaatggcatcgcctcaaattctaatgggacc 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_b08.g1 MSMg01no520_b08.g1 CHROMAT_FILE:
MSMg01no520_b08.g1 PHD_FILE: MSMg01no520_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:01 2005
(684 letters)
>mm_chr11_63327233_63328313
Length = 1081
Score = 1172 bits (606), Expect = 0.0
Identities = 662/686 (96%), Gaps = 12/686 (1%)
Strand = Plus / Plus
Query: 1 actgagaagagaaaaggcaaaaaacatgccagtgtagcttttttcataactgattaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagaagagaaaaggcaaaaaacatgccagtgtagcttttttcataactgattaaaaa 260
Query: 61 aaaaaaaaagggatcagtcaattcaaaacacaacagaagagataaaggcatcatatgtta 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaa---ggatcagtcaattcaaaacacaacagaagagataaaggcatcatatgtta 317
Query: 121 ataaaaggaaaaccacatcctaatcataaacacattcatattgaatgttaggaccctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ataaaaggaaaaccacatcctaatcataaacacattcatattgaatgttaggaccctctg 377
Query: 181 atttacaacataatctataagttcattcatattaaaaatatgggtagactagaatatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atttacaacataatctataagttcattcatattaaaaatatgggtagactagaatatcat 437
Query: 241 ggtgttaagtgatacaagccaaccatagaaagacaagaatgcttatcatcataagcagaa 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggtgttaagtgatacaaaccaaccatagaaagacaagaatgcttatcatcataagcagaa 497
Query: 301 tctaggtttaaatatgtgcatatgatgtaaaacttaaaagtattttaggttgagaaagga 360
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 498 tctaggtttaaatatatgcttatgatgtaaaacttaaaagtattttaggttgaggaagga 557
Query: 361 gtatagagaggaggaggaggaggaacatttttatacatttatacacatgtgtgcatatac 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtatagagaggaggagga------acatttttatacatttatacacatgtgtgcatatac 611
Query: 421 acatgtgtcttgaaagctgtagtgaacaatttgggaatgaaaaagagtgtgggagggtaa 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 612 acatgtgtcttgaaagctgtagtgaacaatttgggaatgaagaagagtgtgggaggctaa 671
Query: 481 taggggg--tgaagtttgagaagtcaacatatatcataataaacaacactattttataca 538
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 672 tagggggggtga-gtttgagaagtcaacatatataataataaacaacactattttatacg 730
Query: 539 ttacccccaaactgaattaaaaccctctatttacaaagcattccattgtatgctctgggt 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttacccccaaactgaattaaaaccctctatttacaaagcattccattgtatgctctgggc 790
Query: 599 tggttagttttaaatgccaatttgccacaacctagaatcacttgggcaaagagtctcagc 658
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 791 tggttagttttaaatgcctatttgccacaacctagaatcacttgggcaaagagtctcaac 850
Query: 659 tgaggaattatctagaatgggctggc 684
||| ||||||||||||||||||||||
Sbjct: 851 tgaagaattatctagaatgggctggc 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1081
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1071
Effective search space: 721854
Effective search space used: 721854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
