Query= MSMg01no520_p01.b1 MSMg01no520_p01.b1 CHROMAT_FILE:
MSMg01no520_p01.b1 PHD_FILE: MSMg01no520_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:07 2005
(609 letters)
>mm_chr11_70986215_70987222
Length = 1008
Score = 559 bits (289), Expect = e-163
Identities = 474/545 (86%), Gaps = 23/545 (4%)
Strand = Plus / Minus
Query: 5 gaattctggggatggcatccctgtgcctggggcttgggtagatagaaacccatctgctat 64
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 541 gaattctggggatggcatccctgtgcctgggactcaggtagatagaagcccatctgctat 482
Query: 65 gtggggctgtgcacagatcatacacatgcaagtcacatgcctctgctacctctctgtccc 124
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 481 gtggggctctgcacagatcatac-catgcaagtcacatgcctctgctacctctctggccc 423
Query: 125 ctcaggtacagatgtaccccaatcactgatgccagttgggagattctcttctacaatctt 184
||||||||||| || |||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 422 ctcaggtacaggtggaccccaatcactaatgccagttggaagattcttttctacaatctt 363
Query: 185 aaattcaccagaaatctggaggagctggacctcagtggaaatccactgaactactctgca 244
||||||| ||| |||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct: 362 aaattcaacagtaatctggaggggttggacctcagtggaaatccactgagttactctgca 303
Query: 245 gtgcaatatctctgtaaggccctgagataccctggctggcaactaaagaccttgtggtga 304
||||||||||||||| | ||| ||| |||||||||||| ||||||||||| |||||||||
Sbjct: 302 gtgcaatatctctgtgatgccatgatataccctggctgccaactaaagactttgtggtga 243
Query: 305 gtctggactgggttctcccctgaaacaagggtagatgg--------------aaag-atg 349
|||||| ||||||||||||||||| | |||||||||| |||| ||
Sbjct: 242 gtctgggctgggttctcccctgaagtatgggtagatgggaggacattaaggcaaaggata 183
Query: 350 tctagggtgaggcttggtatttatcaaatattcactgaactccaatgaccacacctgtaa 409
|||||| |||||||||||||| ||| ||||||||| |||||| || |||||| | |||
Sbjct: 182 tctaggcagaggcttggtatttgtcagatattcactaaactcccattaccacaattataa 123
Query: 410 cacatgccagacttgttaagaa-aaacaaatgggac--tctgttcttggggatcatgaaa 466
|||||||||||| ||||| || |||||||||| | ||| |||||||||| |||||||
Sbjct: 122 aacatgccagactggttaa-aataaacaaatgg-atgttcttttcttggggagcatgaaa 65
Query: 467 gattgcattcatcaagaaatcccactagctaatgattaa-attggactcatgaggacctc 525
|||||||||||||||||||||||| ||||||||||| || | || |||||||||| | ||
Sbjct: 64 gattgcattcatcaagaaatcccattagctaatgat-aacactgaactcatgagggcttc 6
Query: 526 agtgg 530
|||||
Sbjct: 5 agtgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space: 597802
Effective search space used: 597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_p01.g1 MSMg01no520_p01.g1 CHROMAT_FILE:
MSMg01no520_p01.g1 PHD_FILE: MSMg01no520_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:07 2005
(624 letters)
>mm_chr11_70928204_70929227
Length = 1024
Score = 1180 bits (610), Expect = 0.0
Identities = 620/624 (99%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 agataggcttcctctctttgatgtgagaacacctgctttcctttgtaccacatttcttga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agataggcttcctctctttgatgtgagaacacctgctttcctttggaccacatttcttga 260
Query: 61 gtctcatgatggaactggaaaactggaaggaaaagagctcaggagaggcagttgagaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcatgatggaactggaaaactggaaggaaaagagctcaggagaggcagttgagaatg 320
Query: 121 acttcatgatggtatgttaagcatgatcacacactctgtatactatagctgtgttggttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcatgatggtatgttaagcatgatcacacactctgtatactatagctgtgttggttc 380
Query: 181 acatggtccttgaattcttccaaggatacaaggatacaaggaggaccatagggagaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatggtccttgaattcttccaaggatacaaggatacaaggaggaccatagggagaggag 440
Query: 241 agagaagggatagttgacactctccctcccagagagagagacagagagagacagagagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaagggatagttgacactctccctcccagagagagagacagagagagacagagagag 500
Query: 301 acagagagagagagacagagagagacagagagagagacagagagagagagacagataaag 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ac--agagagagagacagagagagacagagagagagacagagagagagagacagataaag 558
Query: 361 acagagacagaaagacagagatagagggacagagacaaacagagagagacacagatacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acagagacagaaagacagagatagagggacagagacaaacagagagagacacagatacac 618
Query: 421 agagacacacagacacacagacacacagagacacacagagagatagagatacagataaat 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 agagacacacagacacacagacacacagagacacagagagagatagagatacagataaat 678
Query: 481 tcacaacaccaaagaaatattagggaaaccaagtagtaaatttcaaagaatgattatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcacaacaccaaagaaatattagggaaaccaagtagtaaatttcaaagaatgattatttt 738
Query: 541 aaaaagtatttatatctttttaatttgtatgtatgatagtttgcctgcttgtctgtgcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaaagtatttatatctttttaatttgtatgtatgatagtttgcctgcttgtctgtgcct 798
Query: 601 tatatgaatgtaggagctggcaga 624
||||||||||||||||||||||||
Sbjct: 799 tatatgaatgtaggagctggcaga 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
