Query= MSMg01no521_e23.b1 MSMg01no521_e23.b1 CHROMAT_FILE:
MSMg01no521_e23.b1 PHD_FILE: MSMg01no521_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:36 2005
(695 letters)
>mm_chr11_27405974_27407068
Length = 1095
Score = 1317 bits (681), Expect = 0.0
Identities = 690/693 (99%)
Strand = Plus / Plus
Query: 3 ggaattccatacaaattttacgcacctgacacaatccaggtccctcttattctcttagag 62
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccatacaaattttatgcacctgacacaatccaggtccctcttattctcttagag 262
Query: 63 cctaagataattattgtagctgtggatactctgaaacagacacatatcccactgctggta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctaagataattattgtagctgtggatactctgaaacagacacatatcccactgctggta 322
Query: 123 tttaaacaaaaacatattcatataacataactgggttttaaaagaaaccaaaattttcat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttaaacaaaaacatattcatataacataactgggttttaaaagaaaccaaaattttcat 382
Query: 183 tatagacagggtcatgcactaaagctagagtttaattgattcagctatgctcaggactat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatagacagggtcatgcactaaagctagagtttaattgattcagctatgctcaggactat 442
Query: 243 gggtgtctctttcccacagacatggtagtgttacaagaataaaccacttttatatctaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 443 gggtgtctctttcccacagacatggtagtgttacaagaataaaccacttttatgtctaag 502
Query: 303 acatgtacaatattactctatgctaaaattattgttcttttataaaataaaaattaacct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 acatgtacaatattactctatgctaaaattattgttcttttataaaataaaaattaatct 562
Query: 363 tcaaatttttgatgatgttcatttcagaacacatggtggctcaagtattaagtgcataag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcaaatttttgatgatgttcatttcagaacacatggtggctcaagtattaagtgcataag 622
Query: 423 tagaaaatctaaataaaccatgttttttagttcaaaatacacttctttttttttttcagt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tagaaaatctaaataaaccatgttttttagttcaaaatacacttctttttttttttcagt 682
Query: 483 atacaatcatgttttatttgaaaagatgtctacgctgtattgaataccaacacaggtgat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atacaatcatgttttatttgaaaagatgtctacgctgtattgaataccaacacaggtgat 742
Query: 543 gaagatactacagctgtgtcccagcaatactgagtaccaatggtatgtcacaaagaccag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaagatactacagctgtgtcccagcaatactgagtaccaatggtatgtcacaaagaccag 802
Query: 603 aaatatcttctattaacatcaaaccttcacatccatcacataaaagcagttaaaacttat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaatatcttctattaacatcaaaccttcacatccatcacataaaagcagttaaaacttat 862
Query: 663 acaagattatttttgctttccctgtctttgctc 695
|||||||||||||||||||||||||||||||||
Sbjct: 863 acaagattatttttgctttccctgtctttgctc 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_e23.g1 MSMg01no521_e23.g1 CHROMAT_FILE:
MSMg01no521_e23.g1 PHD_FILE: MSMg01no521_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:36 2005
(579 letters)
>mm_chr11_27592728_27593705
Length = 978
Score = 866 bits (448), Expect = 0.0
Identities = 524/580 (90%), Gaps = 49/580 (8%)
Strand = Plus / Minus
Query: 1 cagtagagaatttgaacttcaggagagagtcagaagaaggaagactcaccacatggactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagtagagaatttgaacttcaggagagagtcagaagaaggaagactcaccacatggactc 492
Query: 61 aggggatctagaaatatgaaacaagtgagaagtaattagtgatgtgacacacatagaata 120
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 491 aggggatctagaaatatgaaacaagtgagaagtaattaatgatgtggcacacatagaata 432
Query: 121 gaataaacaggttacgtaagttatcagttagttggagaatgagccaaagtttgtggccta 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 431 gaataaacaggttatgtaagttatcagttagttggagaatgagccaaagtttgtggtcta 372
Query: 181 ggcatttattcataaatcattaagtcccagagtaattatttcaggacctgggacagggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggcatttattcataaatcattaagtcccagagtaattatttcaggacctgggacagggaa 312
Query: 241 ataaaaaaatgccagtggctaaaagagacagatcaaaagatgataaaattgtaaagaaaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 at-aaaaaatgccagtggctaaaagagacagatcaaaagatgataaaattgtaaagaaaa 253
Query: 301 agtttaaactatatccttctttgaaaatgtcatcaatctatccttttaacaacagaaata 360
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 agtttaaactatatccttatttgacaatgtcatcaatctatccttttaacaacagaaata 193
Query: 361 acaggaatgatgcaaatatgaactcacaaaaactatggcagcttataaaaaacccatatg 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 192 acaggaatgatgcaaatatgaactcacaaaaactatggcagcttatacaaaacccatatg 133
Query: 421 gatctagccagatggggttccaacactgaaagggaaaatagatacaaactagccacaatt 480
||||||||||||| ||
Sbjct: 132 gatctagccagat---------------------------------------------tt 118
Query: 481 aggccaacagtacatggtaaaccacaaaataatttcaatgttattttgctgtgatttttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 aggccaacagtacatggtaaaccacaaaataatttcaatgttattttgctgtgatttttt 58
Query: 541 t---attcataatgctctgttatgatgatggtgatggtga 577
| ||||||||||||||||||||||||||||||||||||
Sbjct: 57 ttaaattcataatgctctgttatgatgatggtgatggtga 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
