Query= MSMg01no521_l24.b1 MSMg01no521_l24.b1 CHROMAT_FILE:
MSMg01no521_l24.b1 PHD_FILE: MSMg01no521_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:10 2005
(607 letters)
>mm_chr11_114315588_114316590
Length = 1003
Score = 1110 bits (574), Expect = 0.0
Identities = 596/606 (98%), Gaps = 7/606 (1%)
Strand = Plus / Minus
Query: 4 tctct--gcggcctctgtcagctcggtgctacctctccctgctacagaggacattttggt 61
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 667 tctctaggcggcctctgtcagctcggtgctgcctctccctgctacagaggacattttggt 608
Query: 62 acaggcctgtgtatgcccaagcttattcctggtatctttgactgatagtggccgcttccg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 acaggcctgtgtatgcccaagcttattcctggtatctttgactgatagtggccgcttccg 548
Query: 122 gcgccatctctccaggtctttcagtgttcagtgggtcacggcagagggcaggtgttgtag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcgccatctctccaggtctttcagtgttcagtgggtcacggcagagggcaggtgttgtag 488
Query: 182 aaagtggcctttatcaagcaaaacagaagcacctttctcagatcagctgtgcctgccaaa 241
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 487 aaagtggcctttatcaagcaaaac----gcacctttctcagatcagctgtgcctgccaaa 432
Query: 242 ggtcatcatggcctggcttgttgactattggcattctttcaggatggagggggtgagaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggtcatcatggcctggcttgttgactattggcattctttcaggatggagggggtgagaag 372
Query: 302 ggtcactgggtcctcccctaagacactagctgcacctttcaggcatttgcatgtaattct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggtcactgggtcctcccctaagacactagctgcacctttcaggcatttgcatgtaattct 312
Query: 362 accctaattccacatagcctcaggatccagggaggtgccaggatatttagactcgtggag 421
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 311 accctaattccacatagcctcaggatccagggaggtgccagcatatttagactcgtggag 252
Query: 422 attaattgagaaagactccatttatatagctagctatgggggaagccattgcccatgctg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 attaattgagaaagactccatttatatagctagctatgggggaagccattgcccatgctg 192
Query: 482 ggtgaagactttccagtgtggttggtttttttttggggggggtccctcatgtttcagcca 541
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 191 ggtgaagactttccagtgtggttggtttttttg-ggggggggtccctcatgtttcagcca 133
Query: 542 gtagctcctctcccatactctgtaagtaagcccaataaagtcattggttccccaggggag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtagctcctctcccatactctgtaagtaagcccaataaagtcattggttccccaggggag 73
Query: 602 ggaaac 607
||||||
Sbjct: 72 ggaaac 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1003
Length adjustment: 10
Effective length of query: 597
Effective length of database: 993
Effective search space: 592821
Effective search space used: 592821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l24.g1 MSMg01no521_l24.g1 CHROMAT_FILE:
MSMg01no521_l24.g1 PHD_FILE: MSMg01no521_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:11 2005
(509 letters)
>mm_chr11_114167793_114168700
Length = 908
Score = 899 bits (465), Expect = 0.0
Identities = 498/509 (97%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 1 ctccctcacccaaggactcaggaggaagagaacccacaaccctgcctaaggtaaattgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctcacccaaggactcaggaggaagagaacccacaaccctgcctaaggtaaattgag 260
Query: 61 gaggcaagcttgcagacagtcaagcagccatttagcagaatggatttaaggaaccccact 120
||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||||
Sbjct: 261 gaggcaagcttgcagacagccaagcagcca-ttagcagaatggagttaaggaaccgcact 319
Query: 121 gcggccacaggaggaggcttagattggaggagaaaaggaagtagctatatggaacagggt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcggccacaggaggtggcttagattggaggagaaaaggaagtagctatatggaacagggt 379
Query: 181 ccttcccattttccctgtgaatcagatagaccagacccttccttagcatcctctgtggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttcccattttccctgtgaatcagatagaccagacccttccttagcatcctctgtggct 439
Query: 241 ccctagtgatttctgcatctcatgtaaacacctcactctgtgctccaggtcctccgtgca 300
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 440 ccctagtgatttctgcatctcacgtaaacacctcattctgtgctccaggtcctccgtgca 499
Query: 301 tgccttcctccatctggaggtcaccttgctgggtaactgtcctctcggtcatctaagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgccttcctccatctggaggtcaccttgctgggtaactgtcctctcggtcatctaagcct 559
Query: 361 gttctgaccgatttcaagagggtcttcctttacaatctgtgctttatccaaagttagttg 420
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttctgacctatttcgagagggtcttcctttacaatctgtgctttatccaaagttagttg 619
Query: 421 ggcaaagtgcgtgaccttcattccacttgtcttagaattctgtgtcttggtagttctcaa 480
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggcaaagtgagtgatcttcattccacttgtcttagaattctgtgtcttggtagttctcaa 679
Query: 481 gtggtgagaagttgcccttgtatgtgaga 509
|||||||||||||||||||||||||||||
Sbjct: 680 gtggtgagaagttgcccttgtatgtgaga 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space: 448102
Effective search space used: 448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
