BAC Information

Click to search

BAC

Clone NameMSMg01-522H03
Chromosome11 (Build37)
Map Location 97,379,055 - 97,379,484
singlet/doubletsinglet
Overlap geneP140
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik
Downstream gene2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522H03.T7 (MSMg01no522_h03.b1)MSMg01-522H03.TJ (MSMg01no522_h03.g1)
ACCAG593001AG593002
length761554
length of high quality
(start - end)		612 (49 - 660)419 (93 - 511)
definitionCHROMAT_FILE: MSMg01no522_h03.b1 PHD_FILE: MSMg01no522_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:03 2005CHROMAT_FILE: MSMg01no522_h03.g1 PHD_FILE: MSMg01no522_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAGAGCTCTGCCTGCCTTTCCTCCTGAGTGCTGGGATTAGG
GGCATGCACCACAACTGCCTGGCCTGTCTGTTTTATTTTTGTGAGACTAA
GTCTTGCTTTGCAGCCTCTATTGGCCTGGAGTTTGCAGTGTACACCAAGA
TGGCTTTGAACTCAGAGATCTGCTTGCCTTTGCCCCTCAGGTGTCATATG
CCACTATGCCTGACCTGGAACACTTTTGTGAATAATACTTACGTGTTTTC
TGTGCTTTTGGGGTTGTAATTGTTGGATCATATAGTAATTCTACATTGAT
ATTTTGTTTTGTTTTGTTTGTTTGTTTTCGAGACAGGGTTTCTCTGCATA
GCCCCGACTGTCCTGGAACTCACTCTGTAGACCAGGCGGCTTTGAACTCA
GAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCC
ACCACTGCCTGGCTGATTTTTTTATTAATTATTTTATTCATTTACATTTT
AAATGATATCCCCCTTCCCGGTTACCCCTTCACAAAGTCCCCATCCCCCC
CCATGAATTTTTGATGCATTTATTTATGTATGAGTACTGTATTTGCATGA
CAGAAGAAGACATCAGACCCAAGAGGGCATCAGATCCCATTTTGGATGGT
TGTGAGCCACCATGTGGTTGCTGGGAATCAACTCANGACCTCTGTATAGC
AGCTAGTGTCC

NNNGGGTCTNNNNNNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCATGC
TGCCTAGGGCCCTGGAGCCTGCTCATGAGGTCTTCCTTGGCAGAGAGTAG
AGGAGGGTCCTGGATGTAGCTATTGCGAGCCCCTCAGTGCACACACTGAG
TTCAAAACCTCTCCTGAGTAGCTAGCTCTTACGTGCCAGACCTGTTTGGG
GTCCCAGGTAGGCCTTGTTCTGTCTAGATAGAGATCCAAAGCTCAGAGGT
GTAAGGTGAGGGATGGTTAAGGCCACAAGGATCAGCTCAGAGCGGGAAAG
AGATCTCCCAGACCTGCATAGCAAATGAAGACTTAGCTATCTTAAAATCT
TAAAACCGCTTCCACCACAGGCCCCAGATAGCCCTGGGCAATCTTGTCTA
CCCGNNTTGGCTCCTAGGAAGACAAACATTCAGNTTGAACCCCAGCTTTA
AATTTCGCAGCCCCCCCACTTTTCTTTGTGGGTCCCCGGGGGCTCACCCC
AAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_h03.g1 MSMg01no522_h03.g1 CHROMAT_FILE:
MSMg01no522_h03.g1 PHD_FILE: MSMg01no522_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:03 2005
         (419 letters)



>mm_chr11_97378999_97379817
          Length = 819

 Score =  725 bits (375), Expect = 0.0
 Identities = 412/435 (94%), Gaps = 21/435 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccatgctgcctagggccctggagcctgctcatgaggtcttccttggcagagagtagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acccatgctgcctagggccctggagcctgctcatgaggtcttccttggcagagagtagag 427

                                                                       
Query: 61  gagggtcctggatgtagctattgcgagcccctcagtgcacacactgagttcaaaacctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gagggtcctggatgtagctattgcgagcccctcagtgcacacactgagttcaaaacctct 367

                                                                       
Query: 121 cctgagtagctagctcttacgtgccagacctgtttggggtcccaggtaggccttgttctg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 366 cctgagtagctagctcttacgtgccagacctgtttggggccccaggtaggccttgttctg 307

                                                                       
Query: 181 tctagatagagatccaaagctcagaggtgtaaggtgagggatggttaaggccacaaggat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctagatagagttccaaagctcagaggtgtaaggtgagggatggttaaggccacaaggat 247

                                                                       
Query: 241 cagctcagagcgggaaagagatctcccagacctgcatagcaaatg--------------- 285
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 246 cagctcagagcgggaaagagatctcccagacctgcatagcaaatgacactagagccaagc 187

                                                                       
Query: 286 -aagacttagctatcttaaaatcttaaaaccgcttccaccacaggccccagatagccctg 344
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 caagacttagctatcttaaaatcttaaaaccgcttccaccacaggccccagatagccctg 127

                                                                       
Query: 345 ggcaatcttgtctacccgnnttggctcctaggaagacaaacattcagnttgaaccccagc 404
           ||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 126 ggcaatcttgtctacccg--ttggctcctaggaagacaaacattcag-ttg-accccagc 71

                          
Query: 405 tttaaatttcgcagc 419
           ||| |||||||||||
Sbjct: 70  ttt-aatttcgcagc 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |