BAC Information

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BAC

Clone NameMSMg01-522M04
Chromosome11 (Build37)
Map Location 8,684,288 - 8,684,751
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665380, Tns3
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522M04.T7 (MSMg01no522_m04.b1)MSMg01-522M04.TJ (MSMg01no522_m04.g1)
ACCAG593242AG593243
length768749
length of high quality
(start - end)		472 (49 - 520)668 (82 - 749)
definitionCHROMAT_FILE: MSMg01no522_m04.b1 PHD_FILE: MSMg01no522_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:27 2005CHROMAT_FILE: MSMg01no522_m04.g1 PHD_FILE: MSMg01no522_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCAGGTTGTAGAGGGTTCAGAACCAGTCAGGCTGTCAATCC
TGACTCAAATCGTGCTCCCAACAGACTGACACATTAATGGAGATCATTAC
ATCTTCCCAAACCAGAACACCACTGCACAGAGTAATCGGCTTATCCTGTA
CCATCTGGCCAGAGCGGCTCCAACTGGTTCCAGAGCTGTGGATGTGCCTG
GATGGATGTTAAATTGTCCAAGCAACAAAGCCCAAGTTGGAAAATGGATT
GGCTTTTGGATGGACTTGCAGTGTTCTCTGGTTTAAGAAAACAGATCTGG
ACAGCAGTGCTGGTGTTAGCCAGAAGGAGCTTAGTCTTGTCCCCACTTCC
CTGTGTCTCACAGTAGGGTCTTTGACATCCCCACCTCCTGCACAAAAGGG
TGTTCAAGGATGTTATGCAATGCTCTGAGGGGTGGGGCATTTTACCTTCC
GCATCTTACCCGATCCTCTGTTCTGTCCTGCAAAAGTANGGAAAGTCTTT
ACTGCCCAGAATGAAGAACCTGAAAAGGCATTAATTTAAGGGCCCCCAAA
GGAAAAAAAAAAACCCAATTTTTTTTTTATTTCACAAAACCTTTTTTCTG
TTTTAAACCCCCCCCGAGAGAAAAACGCCCCGCCTTTTTTTTTAAAACAC
ACCCTGNTTTTTTTTTTTTTTTTTTTANTNTTGGTTTTTTTTAAAAAAAA
ACTCCGCCCCCTGCCCCG

NNNAACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTATCTTTT
CAGTAACATTCAAATTTACTTCTAGTAGAGACATGTGAAACTAATTAGGC
ATTACAAAAAATGGAGATGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTT
ACTTGGGACAATAGCCAGTTTTACCCAGACAAGGGAATTCACAATGTCCT
AGAGAATAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACA
GGTTTCTTCACTAGGCCCAAAGAAACAGTATAAATCAGGCATTTACTAAG
AACCCCTGGTGGTGGGCTTAACAATAGACTAACATTATACCTGGCTCCCT
TCTTAGTGGTAGCGGCCTGGTCCCCATCTTCTTTTGATGTATACATTCCT
TTTGTATTGTGTCACTGTAACTAGGAAGATGTATCTCGCCTGGTTTCTTG
TTGCTCTTCTGAATAAAAAGTATGATGCTCAACTTGAAAAATTACATTCA
AATTCTACACAATCTCTCGTGTTGATTCTGTTTGTCATTCATTCACCGAC
TCCTTGTCCACCTGCAACCACAGACCCGTTCTACGCAGACAGGGACCAAA
AGGGTCCGTGGCAATACATACACACACACACACACACACACACACACACA
CACACACACATATATATATATATACACACACATGCATACATACATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_m04.b1 MSMg01no522_m04.b1 CHROMAT_FILE:
MSMg01no522_m04.b1 PHD_FILE: MSMg01no522_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:27 2005
         (472 letters)



>mm_chr11_8684084_8684955
          Length = 872

 Score =  851 bits (440), Expect = 0.0
 Identities = 458/464 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccaggttgtagagggttcagaaccagtcaggctgtcaatcctgactcaaatcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattcaccaggttgtagagggttcagaaccagtcaggctgtcaatcctgactcaaatcg 609

                                                                       
Query: 65  tgctcccaacagactgacacattaatggagatcattacatcttcccaaaccagaacacca 124
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 608 tgctccccacagactgacacattaacggagatcattacatcttcccaaaccagaacagca 549

                                                                       
Query: 125 ctgcacagagtaatcggcttatcctgtaccatctggccagagcggctccaactggttcca 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgcacagagtaatcggcttatcctctaccatctggccagagcggctccaactggttcca 489

                                                                       
Query: 185 gagctgtggatgtgcctggatggatgttaaattgtccaagcaacaaagcccaagttggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagctgtggatgtgcctggatggatgttaaattgtccaagcaacaaagcccaagttggaa 429

                                                                       
Query: 245 aatggattggcttttggatggacttgcagtgttctctggtttaagaaaacagatctggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aatggattggcttttggatggacttgcagtgttctctggtttaagaaaacagatctggac 369

                                                                       
Query: 305 agcagtgctggtgttagccagaaggagcttagtcttgtccccacttccctgtgtctcaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agcagtgctggtgttagccagaaggagcttagtcttgtccccacttccctgtgtctcaca 309

                                                                       
Query: 365 gtagggtctttgacatccccacctcctgcacaaaagggtgttcaaggatgttatgcaatg 424
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 308 gtagggtctttgacatccccacctcctgcacaaaagggtgttcatggatgttatgcaatg 249

                                                       
Query: 425 ctctgaggggtggggcattttaccttccgcatcttacccgatcc 468
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 ctctgaggggtggggcattttaccttccgcatctcacccgatcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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