BAC Information

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BAC

Clone NameMSMg01-523L13
Chromosome11 (Build37)
Map Location 85,186,538 - 85,186,809
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneAcaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523L13.T7 (MSMg01no523_l13.b1)MSMg01-523L13.TJ (MSMg01no523_l13.g1)
ACCAG593971AG593972
length744755
length of high quality
(start - end)
426 (48 - 473)288 (79 - 366)
definitionCHROMAT_FILE: MSMg01no523_l13.b1 PHD_FILE: MSMg01no523_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:44 2005CHROMAT_FILE: MSMg01no523_l13.g1 PHD_FILE: MSMg01no523_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCTTCAGTATTCTAGTAGTTTGGAATGGACCAGAGCTAACTC
TTACAATTCACCAGCAAAATCTTCTGTCCTGGATTGTCTTTGATATAAGA
AAATTTGCAATTTCTACTTGTTAATACAAACTTGCAATCTCTACCTGTTA
TGGGTCTGTTGAGATGTTCAATTTTTTTATATCATCATTTGGATACTTTG
TACATGTCTAGAAATGTGTTCCTTTATTCTAAATTTCCGATTGATAATGT
ACAACTTCCCATAAGATTCCCATAGGAGACTTTAACCTCTAGGTCAGCAG
CCATGGCTCAATTCTGATTCTGTCCTGTTTCACTTAGTTGGGTTTAAGCT
AATAAAGAAACCACTGTGCGATGCAGCACACAGCCAGCTCTCTGTCAGCC
ATTCCTATTCCTCCTGCTTGATGAGAGAGCCTGAGCAGAAGCACTAACAA
CTGCACAGGACCGAGGGGTAGATAAGCCGGGACTAACCTGAAGCAGTATC
ACAGTAAGGATGCCACACCCTGTGCTAGTGACTGACTCAGAAGGTTTGCC
TTCTAAGACTCACAGGGTATCTACCTGTACACATTAAGACCTGCTGGATC
TTGGATTTGAAAATATTTTCCTTTGTCCTAAAAATTCAGTGAGGGATATA
TACTATTTTTCTTTTCAACACTGAGATACCACTATTTTCTTTTA
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAG
AGAAACCCTGTCTCAAGAAAAAAAAAAAAAAAATATATATATATATATAT
ATTTATAGTTTCAGAGCCAGGCTGAGTGGCCCACATTAGAGATACAGAAC
TCCAAGCAAAGACAGAAAGAGCACCCACAAGTCTGAGCCAGGTGAGCCTC
AACAAGACTGCCAAGATAATCAGCATCGCAAAGGTAGTCTCAAAATACCA
AAGCTATATATAGATAGGTAGACAGAAAGGCAAACACACACACACACACA
CACACACACACACATTCTCTCACACACACACACACACATCTTCAAGTTCA
TTACAACACTGTGTTGTTTTTTGAGACACTATCTCACTAAGCTGCTTAGG
TAGTCCCTGAATTTACCAACCATCTGCCTCAGACTAGTAAGTAACTGGGA
TTACAAACCTGTAACATCTAGCTCCATATTACAACACTTTAATATCAAAT
TTATAGACACTTATGGTATTTGTACTATTCCAAAACACTGGTAATTTTTA
AAAATCAGAATATATACAAATGTCAAAGTCCCTGAAACAGCTCTTGATCA
GTTACATATGGAAATAAAACTGTGAATTTCTTTGACAGTGACAGGGAGGC
GGTTTCATTTCCTGCACTTAAAAACCCGCCGCCGAGATTAAGAACCTCTC
CTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_l13.g1 MSMg01no523_l13.g1 CHROMAT_FILE:
MSMg01no523_l13.g1 PHD_FILE: MSMg01no523_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:44 2005
         (288 letters)



>mm_chr11_85186290_85186977
          Length = 688

 Score =  460 bits (238), Expect = e-134
 Identities = 268/286 (93%), Gaps = 14/286 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctatacagagaaaccctgtctcaagaaaaaaaaaaaaaaaatatat 60
           |||||||||||||||||||||||||||||||||||| ||      ||||| |||||||||
Sbjct: 520 caggacagccagggctatacagagaaaccctgtctcgag------aaaaataaaatatat 467

                                                                       
Query: 61  atatatatatatatttatagtttcagagccaggctgagtggcccacattagagatacaga 120
           |||||||        |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atatata--------tatagtttcagagccaggctgagtggcccacattagagatacaga 415

                                                                       
Query: 121 actccaagcaaagacagaaagagcacccacaagtctgagccaggtgagcctcaacaagac 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 414 actccaagcaaagacagaaagagcacccacaagcctgagccaggtgagcctcaacaagac 355

                                                                       
Query: 181 tgccaagataatcagcatcgcaaaggtagtctcaaaataccaaagctatatatagatagg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 354 tgccaagataatcagcatcgcaaaggtagtctcaaaataccaaacctatatatagatagg 295

                                                         
Query: 241 tagacagaaaggcaaacacacacacacacacacacacacacacaca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tagacagaaaggcaaacacacacacacacacacacacacacacaca 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)