BAC Information

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BAC

Clone NameMSMg01-524H18
Chromosome11 (Build37)
Map Location 121,465,209 - 121,604,238
singlet/doubletdoublet
Overlap geneTbcd, B3gntl1, Metrnl
Upstream geneAnapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Zfp750
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524H18.T7 (MSMg01no524_h18.b1)MSMg01-524H18.TJ (MSMg01no524_h18.g1)
ACCAG594551AG594552
length764744
length of high quality
(start - end)		662 (36 - 697)660 (68 - 727)
definitionCHROMAT_FILE: MSMg01no524_h18.b1 PHD_FILE: MSMg01no524_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:47 2005CHROMAT_FILE: MSMg01no524_h18.g1 PHD_FILE: MSMg01no524_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,603,787 - 121,604,238)(121,465,209 - 121,465,868)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCCAT
GAGGGAATAACAAGAGTCTTCTAATTTAAATATTTGAAAGACAAAATCAA
GTGTGTTCTTTCCATAGTCATAGGCTTCCACAAGAATAAACTAAATAGTA
AGCAGTTTGAAAACATGACTTTGAAAGATCTGGCAACCTCTCATGATACC
AGTGCTCACTTTTTTATAAAAATGCTTTTAACAAACTTTTCTCCTGGATA
CAAGCTAAGATAAACTGTGTCTTCCTATATAGCCCACTGTGATACTTTGA
AGATGCTTGGCCCAGGGAGTGGCACTATTAGGAGACGTGGCCTTGTTGGA
AGAAGTATGTCACTGTGGGCATGGGCTTTGAGACCCTCCTCCTAGCTACC
TAAGGAGTCAGTCTTCTCCTGTTTCCCTTTAGAACAGGATACAGAACTCT
CAGCTCCTCTAACACCATGTCTGCCTGGATGCTGCCATGCTTCCTATCAT
AAAGATACTGGACTGATCCTCTGAAGCTGTAAGCCAGCCCTAGTTAAATG
TTGTCCTTTATAAGAGTTGCCTTAATCATGGTGTCTCTTCATAGCAATGA
AAACACTAAGACACCCACTAAACCCAAGCTATCTGGAACAGGCATTTACC
AGACGTTTCTCCAACCTCTGAACTCCCTGAAGTGATATATTCCTGTCCTC
AGTGATTGCCTAGACCAGAGCAATGACATCTCATGGCCATCAGCTAGTCC
ACAGATGTAGGTCA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCTCCTCTGTGTCTTGCTGGTCCCTAGGCCTG
GCACTGATTGGTAATCCCTTTCCCTTGATGCACTCTCAGCAGGAAAATGA
CTTTGTATGTGTGGAGATGCAGAATACCAAGTGAAGTGGAGTGAGGCTCT
AGTCTGTAGGAATATTCTCCATCTTTTCTTGTCTGTAATAGCCCCACTGA
GACATAAGAGCCCTGAAAGACAACACACGGAGTGTGTGCCCTGGTTCCTT
GGGATGCGTATTCCACAGATCCTTTCCCGTTCACCGAGTTTTCCTCCTGC
TCCTTGGAGCCCTCCCAGCTGTTCACTTTGGCAGACAAGCACAGTTACTT
CTGTCTGTCCTTGTTGTTGCCTGGCCAGGGCCTGTTGTGGACAGGAACTG
ACTCGTTTGGATATTCCCCATTTCCTGCCCTACAGACAGCTACAGTGGAC
ATTCCGAGATTGAGTCTCTGTAGATGCACATTCTCTTTCCTTGGGTACTC
ATTGAGTAATGGACAGCTGAGTCACGTGGGTTGCTTGTTTACATGTAAAG
CTGCTGGCTCCCTCTGTTCCATGGCTCACCAGCATTAGTGGTCCGTCTCT
CAGGTGGCTGTTGGACACTCGGTTGCCCTCCTAGTATCTGTTCATTGCCA
TAGCTTGTGTAGATGGGCTTTCCTTCTCACTGTTGTTTTAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_h18.b1 MSMg01no524_h18.b1 CHROMAT_FILE:
MSMg01no524_h18.b1 PHD_FILE: MSMg01no524_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:47 2005
         (662 letters)



>mm_chr11_121603787_121604848
          Length = 1062

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccatgagggaataacaagagtcttctaatttaaatatttgaaagacaaaatcaag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaattccatgagggaataacaagagtcttctaatttaaatatttgaaagacaaaatcaag 393

                                                                       
Query: 67  tgtgttctttccatagtcataggcttccacaagaataaactaaatagtaagcagtttgaa 126
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgtgttctttccatagacataggcttccacaagaataaactaaatagtaagcagtttgaa 333

                                                                       
Query: 127 aacatgactttgaaagatctggcaacctctcatgataccagtgctcacttttttataaaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aacatgactttgaaagatctggcaacctctcatgataccagtgctcacttttttataaaa 273

                                                                       
Query: 187 atgcttttaacaaacttttctcctggatacaagctaagataaactgtgtcttcctatata 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atgcttttaacaaacttttctcctggatacaagctaagataaactgtgtcttcctatata 213

                                                                       
Query: 247 gcccactgtgatactttgaagatgcttggcccagggagtggcactattaggagacgtggc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gcccactgtgatactttgaagatgcttggcccagggagtggcactattaggagacgtggc 153

                                                                       
Query: 307 cttgttggaagaagtatgtcactgtgggcatgggctttgagaccctcctcctagctacct 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 152 cttgttggaagaagtatgtcactgtgggcatgggctttgagaccctcctcctagctgcct 93

                                                                       
Query: 367 aaggagtcagtcttctcctgtttccctttagaacaggatacagaactctcagctcctcta 426
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  aaggagtcagccttctcctgtttccctttagaacaggatacagaactctcagctcctcta 33

                                           
Query: 427 acaccatgtctgcctggatgctgccatgcttc 458
           ||||||||||||||||||||||||||||||||
Sbjct: 32  acaccatgtctgcctggatgctgccatgcttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_h18.g1 MSMg01no524_h18.g1 CHROMAT_FILE:
MSMg01no524_h18.g1 PHD_FILE: MSMg01no524_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:47 2005
         (660 letters)



>mm_chr11_121465009_121466068
          Length = 1060

 Score = 1261 bits (652), Expect = 0.0
 Identities = 658/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcctctgtgtcttgctggtccctaggcctggcactgattggtaatccctttcccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcctctgtgtcttgctggtccctaggcctggcactgattggtaatccctttcccttg 260

                                                                       
Query: 61  atgcactctcagcaggaaaatgactttgtatgtgtggagatgcagaataccaagtgaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcactctcagcaggaaaatgactttgtatgtgtggagatgcagaataccaagtgaagt 320

                                                                       
Query: 121 ggagtgaggctctagtctgtaggaatattctccatcttttcttgtctgtaatagccccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagtgaggctctagtctgtaggaatattctccatcttttcttgtctgtaatagccccac 380

                                                                       
Query: 181 tgagacataagagccctgaaagacaacacacggagtgtgtgccctggttccttgggatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagacataagagccctgaaagacaacacacggagtgtgtgccctggttccttgggatgc 440

                                                                       
Query: 241 gtattccacagatcctttcccgttcaccgagttttcctcctgctccttggagccctccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtattccacagatcctttcccgttcaccgagttttcctcctgctccttggagccctccca 500

                                                                       
Query: 301 gctgttcactttggcagacaagcacagttacttctgtctgtccttgttgttgcctggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgttcactttggcagacaagcacagttacttctgtctgtccttgttgttgcctggcca 560

                                                                       
Query: 361 gggcctgttgtggacaggaactgactcgtttggatattccccatttcctgccctacagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggcctgttgtggacaggaactgactcgtttggatattccccatttcctgccctacagac 620

                                                                       
Query: 421 agctacagtggacattccgagattgagtctctgtagatgcacattctctttccttgggta 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 agctacagtggacattccgagattgagtctctgtagacgcacattctctttccttgggta 680

                                                                       
Query: 481 ctcattgagtaatggacagctgagtcacgtgggttgcttgtttacatgtaaagctgctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 ctcattgagtaatggacagctgagtcacgtgggttgcttgtttacatgtaaagatgctgg 740

                                                                       
Query: 541 ctccctctgttccatggctcaccagcattagtggtccgtctctcaggtggctgttggaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccctctgttccatggctcaccagcattagtggtccgtctctcaggtggctgttggaca 800

                                                                       
Query: 601 ctcggttgccctcctagtatctgttcattgccatagcttgtgtagatgggctttccttct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcggttgccctcctagtatctgttcattgccatagcttgtgtagatgggctttccttct 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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