BAC Information

Click to search

BAC

Clone NameMSMg01-525H20
Chromosome11 (Build37)
Map Location 68,943,755 - 68,943,990
singlet/doubletsinglet
Overlap geneAloxe3
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7
Downstream geneAlox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525H20.T7 (MSMg01no525_h20.b1)MSMg01-525H20.TJ (MSMg01no525_h20.g1)
ACCAG595314AG595315
length766771
length of high quality
(start - end)		580 (37 - 616)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no525_h20.b1 PHD_FILE: MSMg01no525_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:07 2005CHROMAT_FILE: MSMg01no525_h20.g1 PHD_FILE: MSMg01no525_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAT
GCACATGGGTGCACCTGTGTGTAGAAGCCAGAGGTTGATGTGAGCTGTCT
GTCTTCATTGGTCTCTACATTATGTATATTGATATGAGGTCTCTCACTCA
AACCGAAGCTTGACAACTAAATGAGTCCAGCTAGCCCATTTACCTGAGAG
GTCTCTGCCCCCTAAGAGCCAGGAGCAGCCCTTGCGTTAATCTAAACTCA
GGTCCTTGCTCTTGTCTAGCAAGCACCTCACCCTGGATTCATCTCTCAGC
CCCAACATCTTCCTTCCATAGCAATCATAGGTGTACCATCGCATATGCTG
AATTTATGTGCTGTGACTTTTCTCTTTATAGTAGGAAGTAGCCCTGTAGA
TATTTATCTGTCTTATTTAACAATGTAATGTATCCCAAAAGTCCTGAAAT
GGTGTCAAGCATATAGTAGGTGCTCAACAGAAGCTTAATGTTTGGTTTGG
TTTGGTTTGTTTTTTCCAGACTGGCTTTCAGTGTGCAGCCCTGACTGTCC
TGGAACTCATGCTGTTTGACAAACTGGCCTTAAACTCAGTCATGCCACTG
CCTCTGCCTCCTGAGTCTTGGGATTAAAGGTGTGCACCACTACCATGTGG
CTTTTGTTTTGTTTTGAGAAAGAGTCTCTTTANGTTGCCAAGTCTGGTCC
TGAACTCCCGAGCTCCCGCAGTTCTCCTACCCAGCCTCTCAAATGCTGGN
TTCTAACTATAAACCN

GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGACAGCCAGGGCTATGTAGAGAGACCCTGT
CTCAAAAAAAGAAACAACAACAAATTAAAGTTACACATCCAGAAAATATG
GGCTTTGGAGTTGAACCTGAGATGGCCTGGCCTCACCTCCTCAAGGCTTA
AGGACAAAGACTATCCTACTTCATTGGCCCCTGGGACCACACCCTGAATA
GGGAGGAGATGAAGGACAAAGCAAAGGGAGGCTGGGAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAATGTAATAATTTTTNANTGTTAGATTGTGATGATTTGTATTTTTTT
GTGTTTTTATAAAAGGGTTGGGTTTTAGTTGTTGTGTAGTGTTTTTATTA
ATATTGTTGTGTTAATTTTAATTTATGGGGGATTTTTATAATTTTATGTT
TTTTTTTGGTTTATGTTGTGGTTTTTATTTTATTTTTGTTATGGGGGTTT
AAAATTTGAGGGTTTTTTATTTTATTTGTATTTTATTTTTTTTTAGGTGG
GGTTGGATTTTTTTGTTTGATTATTTTATTTTTGTTTTTATTTATTTTTA
AATAAGTGGTTAATTTATTAGTATATGATATTTGTTTGTGTTTGGTTTTT
TTTTTTTTTTGTTTTAGTTTGTATTGTGTTGTTTTGTTGGGGTTTATGTG
GGTTTTAGTTTTATTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_h20.g1 MSMg01no525_h20.g1 CHROMAT_FILE:
MSMg01no525_h20.g1 PHD_FILE: MSMg01no525_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:07 2005
         (288 letters)



>mm_chr11_68943538_68944225
          Length = 688

 Score =  449 bits (232), Expect = e-130
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagacagccagggctatgtagagagaccctgtctcaaaaaaagaaacaacaacaaatta 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 453 caagacagccagggctatgtagaaagaccctgtctcaaaaaaagaaacaacaacaaatta 394

                                                                       
Query: 61  aagttacacatccagaaaatatgggctttggagttgaacctgagatggcctggcctcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagttacacatccagaaaatatgggctttggagttgaacctgagatggcctggcctcacc 334

                                                                       
Query: 121 tcctcaaggcttaaggacaaagactatcctacttcattggcccctgggaccacaccctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcctcaaggcttaaggacaaagactatcctacttcattggcccctgggaccacaccctga 274

                                                                   
Query: 181 atagggaggagatgaaggacaaagcaaagggaggctgggaggaaggaaggaaggaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atagggaggagatgaaggacaaagcaaagggaggctgggaggaaggaaggaaggaa 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |