BAC Information

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BAC

Clone NameMSMg01-525K08
Chromosome11 (Build37)
Map Location 19,999,072 - 19,999,634
singlet/doubletsinglet
Overlap geneActr2
Upstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
Downstream geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525K08.T7 (MSMg01no525_k08.b1)MSMg01-525K08.TJ (MSMg01no525_k08.g1)
ACCAG595430AG595431
length742752
length of high quality
(start - end)
563 (59 - 621)360 (67 - 426)
definitionCHROMAT_FILE: MSMg01no525_k08.b1 PHD_FILE: MSMg01no525_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:20 2005CHROMAT_FILE: MSMg01no525_k08.g1 PHD_FILE: MSMg01no525_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
ATTGTCCCACGTAGTTCATTATTGAATTTAATAACTTCAATTAAGGAAAA
TACATGGTAACAACAAAGGCCTAGGTCTGTAAGAGTTAGTTCAGGAGTGT
TTATCTAAACCCTAGTATCCATGTGAAAGGAAAGCCATTTAACTTGAAAG
GCTTAAAAGAGCAAAGTGAAAAGAACTAAAGTAACAAAACACAGACTGAA
GCACTGTATCAGCAAGGCCACTGGGTAGTCCCTGGGAAACGTCTCCCAAG
AAAACTGCTCATTTCTATCACTTGGCCTTAAATTAAAAACCAAGAAAGCA
GGTGTGAAGAAATGTGTTGTTTCTCTCATGCTGGGAAATATATAAATAAT
GGTTATATTTCTCTGAACCTCAAAAATGTTATCATCCATAAAAATGTTTA
AAGCCAGCTACTAAATTACAAAATGAAAGGTACTGCTGTCACTCAGTTCC
CTGCATCACACTACTAGCTAAGTTTCAAGCTGAAGTTCTTCCAAGACAGA
ATGTGACAGGTGTCCTGATACATGCCTTTAATCCTACACTTGGAGGCAGA
GGCAGCTCTCTGAGTTCAGGCCAGCCTATACTACATAGTGAGACCTTGTC
TCCCAGAAAAGAAAAGATAAAATTCTTTCTGAATAAAAATTTATGAAAAG
AGATAAAGGAATCCAGCACAATTTCCCTTAAAGGCTTCTCTT
TTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTGTAGACCAGGGTGATCTCAATCTCACAGA
GATCCACCTACCTTTGCCTCCCAAGTGCTGGGATTAAAGGTATGTGCCAC
CATATGGAATAAGTAACTATTTTAAAAGAAGCTTTCATTAAAAAAAGAAT
TCCAAAATTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCCTGGCTGCT
TTTCTAGAGGTCCTGAGTTCAACTTCCAGCAACCACATAGTGGCTCACAA
CCATTTTATAATAGGATCTAATGCCCTCTTCTGGCACAATGGTGCACGTG
CAGTTAGAGCAATCACACATAAAAATAAATAAATCTTTCTTCTTTTTGTT
TGTTTGAGACAGGGTTTCTCTGTGTGGCCCTGGTTGTCCTGGAGCTCACT
CTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGTCTGTCTCTGCCTCT
TGAGCGCTGGGATTAAAGGCGTGTACCACCACGCTCGGCTTTTTTCTTCT
TTAAAAAAAAAAAAAAAAAAAAATCCCAAATGTGATTACTGATCATCCCT
TTAACTGGAAGGCCAATCCCAAGATAAATTTTGCGAAGATGGGCCCCCCA
ACCATTACATATTCCTACTTAGGTAAAATTGATATTTCTCTATCCCCTTT
TTGGGTTTACGCAATTGAGCATCTTAAACACCCATAAGTTCAATGGAATG
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_k08.b1 MSMg01no525_k08.b1 CHROMAT_FILE:
MSMg01no525_k08.b1 PHD_FILE: MSMg01no525_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:20 2005
         (563 letters)



>mm_chr11_19998872_19999834
          Length = 963

 Score = 1050 bits (543), Expect = 0.0
 Identities = 558/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgtagttcattattgaatttaataacttcaattaaggaaaatacatggtaacaacaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 acgtagttcattattgaatttaataacttcaattaaggaaaatacatggtaacagcaaag 260

                                                                       
Query: 61  gcctaggtctgtaagagttagttcaggagtgtttatctaaaccctagtatccatgtgaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gcctaggtctgtaagagttagttcaggagtgtttatctaaaccctagtattcatgtgaaa 320

                                                                       
Query: 121 ggaaagccatttaacttgaaaggcttaaaagagcaaagtgaaaagaactaaagtaacaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ggaaagccatttaacttgaaaggcttaaaagagcaaagtgaaaagatctaaagtaacaaa 380

                                                                       
Query: 181 acacagactgaagcactgtatcagcaaggccactgggtagtccctgggaaacgtctccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 acacagactgaagcactgtatcagcaaggccactgggtagtccctgggaaaagtctccca 440

                                                                       
Query: 241 agaaaactgctcatttctatcacttggccttaaattaaaaaccaagaaagcaggtgtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaactgctcatttctatcacttggccttaaattaaaaaccaagaaagcaggtgtgaa 500

                                                                       
Query: 301 gaaatgtgttgtttctctcatgctgggaaatatataaataatggttatatttctctgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaatgtgttgtttctctcatgctgggaaatatataaataatggttatatttctctgaac 560

                                                                       
Query: 361 ctcaaaaatgttatcatccataaaaatgtttaaagccagctactaaattacaaaatgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaaaaatgttatcatccataaaaatgtttaaagccagctactaaattacaaaatgaaa 620

                                                                       
Query: 421 ggtactgctgtcactcagttccctgcatcacactactagctaagtttcaagctgaagttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtactgctgtcactcagttccctgcatcacactactagctaagtttcaagctgaagttc 680

                                                                       
Query: 481 ttccaagacagaatgtgacaggtgtcctgatacatgcctttaatcctacacttggaggca 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccaagacagaatgtgacagatgtcctgatacatgcctttaatcctacacttggaggca 740

                                  
Query: 541 gaggcagctctctgagttcaggc 563
           |||||||||||||||||||||||
Sbjct: 741 gaggcagctctctgagttcaggc 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)