Query= MSMg01no526_p21.b1 MSMg01no526_p21.b1 CHROMAT_FILE:
MSMg01no526_p21.b1 PHD_FILE: MSMg01no526_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:05 2005
(658 letters)
>mm_chr11_15197327_15198384
Length = 1058
Score = 1052 bits (544), Expect = 0.0
Identities = 577/588 (98%)
Strand = Plus / Minus
Query: 71 taaatgtagaaaaactttaagcaatcctactaatttcaggaactagacaaggctgccctc 130
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1058 taaatgtagaaaaactttaagcaatcctactaatatcaggaactagacaaggctgccctc 999
Query: 131 tctttccctacctgttcaatatagtacttgaaattctacctagagcaaatagacaacaaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tctttccctacctgttcaatatagtacttgaaattctacctagagcaaatagacaacaaa 939
Query: 191 agcaggtcaaatgtttacaaattggaaagggagaagtcaaaataccactatttacagatg 250
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 938 agcaggtcaaatgtttacatattggaaagggagaagtcaaaataccactatttgcagatg 879
Query: 251 atatgatagtatacttaagcataagattattttaaactcttgttttcactctaaaaatct 310
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 878 atatgatagtatacttaagcataagattattttaaactcatgttttcactctaaaaatct 819
Query: 311 cttaattaaccttaaacttcaaataagttgagaaaattagatgtattcatacctgctgac 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cttaattaaccttaaacttcaaataagttgagaaaattagatgtattcatacctgctgac 759
Query: 371 tttgtcctgtagctccttatttctgtaacttctgtagatttctatttctgttggttcttc 430
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 758 tttgtcctgtagctccttacttctgtaacttctgtagattcctatttctgttggttcttc 699
Query: 431 agatgccaataagtctcattatgagatgtgcatgcagttttcagtaaagcaaatgaaatg 490
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 698 agatgctactaagtctcattatgagatgtacatgcagttttcagtaaagcaaatgaaatg 639
Query: 491 agtgcctagaaagatacacaatttctctttcatggtttattttaacaaatgtatcacatc 550
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agtgcctagaaagatacacactttctctttcatggtttattttaacaaatgtatcacatc 579
Query: 551 aacctcaaaagtgaagaatgaaatctccacatgattaatttaccccagcatgtaaaaatt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aacctcaaaagtgaagaatgaaatctccacatgattaatttaccccagcatgtaaaaatt 519
Query: 611 gatttggaacacataactccaggctatgtgtagcagcttatttattag 658
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 518 gatttggaacacataattccaggctatgtgtagcagcttatttattag 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_p21.g1 MSMg01no526_p21.g1 CHROMAT_FILE:
MSMg01no526_p21.g1 PHD_FILE: MSMg01no526_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:05 2005
(652 letters)
>mm_chr11_15034988_15036039
Length = 1052
Score = 847 bits (438), Expect = 0.0
Identities = 644/832 (77%), Gaps = 181/832 (21%)
Strand = Plus / Plus
Query: 1 attgcaaatgaacatattatttactggtaagaaaaaatgctttcacatacaatgttgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 attgcaaatgaacatattatttactggtaagaaaaaatgctttcacatacaatgttgaaa 81
Query: 61 tggacaaaagtggatcaggacactgtcagcatggagcagagtctgaaaagattcatttta 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 82 tggacaaaagtggatcaggacactgtcatcatggagcagagtctgaaaagattcatttta 141
Query: 121 tcaaaatataaatttgcattagaacatgagcattaaatcttctgctgatgaagtccctag 180
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tcaacatataaatttgc-ttagaacatgagcattaaatcttctgctgatgaagtccctag 200
Query: 181 aacttgagtggaagagttccccctgtagagctcattgtatctcatagagaatctgaggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aacttgagtggaagagttccccctgtagagctcattgtatctcatagagaatctgagcac 260
Query: 241 acaatttcaccagagaaaacaggccatcactcagtcagggctgacaatagcagctgagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatttcaccagagaaaacaggccatcactcagtcagggctgacaatagcagctgagac 320
Query: 301 agcagaaaacttcttgatgatgttaaccccaagtagataaaatttcacagccaaatcgca 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 agcagaaaacttcttgatgatgttaacccaaagtagataaaatttcacagccaaatcgca 380
Query: 361 ccaagtgatctgtctttccacacacagcctctgcttcacttgcctatctctagtcattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagtgatctgtctttccacacacagcctctgcttcacttgcctatctctagtcattaa 440
Query: 421 tctgtcaataaaacacaag----------------------------------------- 439
|||||||||||||||||||
Sbjct: 441 tctgtcaataaaacacaagccctgtgtcttccattttccccacaattctgcattgactac 500
Query: 439 ------------------------------------------------------------ 439
Sbjct: 501 agctttctagactacagaaccttaacatcagcacagaggattgtatttccaactatgttc 560
Query: 439 ------------------------------------------------------------ 439
Sbjct: 561 tagtatctcatagacagaattattgtttatatattactagaagtaacaaaatgtatttgt 620
Query: 440 -------------------agactataaaaccatgaatgttatttggatccacaaacttg 480
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 621 gtccatttagataatgccgagactataaaaccatgactgttatttggatcctcaaacttg 680
Query: 481 aagtagatatctacaattgtcttgtggaggctttggtggtacattcacatataacttcct 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtagatatctacaattgtcttgtggaggctttggtggtacattcacatataacttcct 740
Query: 541 atgaaatatactagagatcaagtgttttgcccttttgccttgtcaacaacacaaaataaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaaatatactagagatcaagtgttttgcccttttgccttgtcaacaacacaaaataaa 800
Query: 601 atgccagcatttatgaagtaaattttgagttgttccttacagcacatgataa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgccagcatttatgaagtaaattttgagttgttccttacagcacatgataa 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
