BAC Information

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BAC

Clone NameMSMg01-527O13
Chromosome11 (Build37)
Map Location 94,312,892 - 94,313,236
singlet/doubletsinglet
Overlap geneCacna1g
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3
Downstream geneSpata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527O13.T7 (MSMg01no527_o13.b1)MSMg01-527O13.TJ (MSMg01no527_o13.g1)
ACCAG597151AG597152
length769943
length of high quality
(start - end)
355 (47 - 401)---
definitionCHROMAT_FILE: MSMg01no527_o13.b1 PHD_FILE: MSMg01no527_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:21 2005CHROMAT_FILE: MSMg01no527_o13.g1 PHD_FILE: MSMg01no527_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGAATGTCCGAGGGTGGGACAGAGCCAGAACACCCAGGCAGGG
TGTGCCCTTGTTCTGTTTCAATGTCAGTTCATGCCTAATACCAGGAGCTG
AACTCCAGGGGACAAGGAGAGGAGCTCTCACCTCCACACAACAGGTGAGG
GAGGTGGTATCAGAAAGGGGCAGGATGTGGGGGGCCATCCAGCTGGCCTA
GCTTGGAAATGTACTGAGTGGCATATAGGCACAAGGTGATCAAGGCGAGA
GTGACAGGGATGTCACAAGGACTCTAAGGGAGCCTGAGCTGCCAGTAGGT
GCAGGCCTGTTGGGGGGGGGGGGAGAAGGGAGCTCTCTCTATCACTCAAA
TGACAGGCCAGGAGAGCCTCATGCCAAGGGCCTGGGTGAAAGAGAACAAA
GGTGGGCAGGTCTGCAATCCTACTGGCCAGGTCTTCAGCCCTGGCACCTG
ACTGTCGGGATGGATGTCAGGTAAGCATGCCTCCCAGATAACTCTGAGGT
TTCCGAGACTGAATCTCCTGGTCGTTTGTAGTGTTTTAGGGCTAACACTC
TCTTTCTCTTTCTTTCTAATCTATTTCTATGAATTGTTTCTTTTATTTTC
ATATTTCTCCTTCCTTTTTTTTTTTTTGCCTTTCCTATTTTCTTATTCAC
CCTCTGTTATCCTTTCTTTTTTTTATTTTTTCCTGCCCGCTCGTTGTCCC
TCTTATCATTTTCCATCTA
CACCCTTTGTTTCTTTATTTGCAGTGGCGAGCGTTATTTTGTTTTCTTTA
TTTATTTGACGTTTTTCTTGTTTTTTTTCTCGTTTTTTCTTTTTCTCTTT
TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTCTATGT
GCCTTATTTTGGTGGTTTGGGGTCCCCTTGGGGCCGGGTCCTCGGCCCCT
TGTTTTTTCTCCAACAAAAAATTGTTTAGTGNTTGTACTACTTTATTAGN
ATTTTTTATTCCCGACGAGGAAATGTTCTTCCTTTAAGGAAAAGCCACCT
TTCTAAACCTTTTGGTTCCTTGGGGGGTCCGGGGCTTTTTCCTTCCCGGA
AGTTTTTTTTCCGTTGGGAGGGGTCCTTCTTTGGAACCCCTTCCATTTTC
TTGGTCATAGCGCGGTTAACTTTCTTGGGGTTTAAAATCCTAGGCTCCTG
CTCCTTTTCGGGGGTAAGGGTCCAAGGGTTTTTTGGGAAAAAAATTGGGC
CCTTTCTTTTTTTTTCCATTTTGGGAAAATTTTCGGGGGGATATTTTTTC
CAAAAGTTTTGGGGTTTTTTTATTGGTTTTTTTTTGTGTTTTTTTTAAAA
ACCCTCTTCCTCTCTCCTGTGGGGGGGAGTGGGGGGTTTTTTTTTCGGGG
TGGGGGGTGCTCCTCTCTCCCTTTTTTTGCGCGAATAAATACTCTTCTTT
TTGATGATACTTTTCTCTCTCTTCCTAAAAATGGGTGGTGTGGGGGTGTC
TGTTTAGTTTTGTTTGTGTTCTTTTTATACTTCTTACTGTCTTTATAAAT
TTACTTTTTCCTTGTGTGNGTGTCCGGTGNTATTAAAAAAGGATATCTTC
TCGTTTTTTTTTTTTTTATTTTTTGTGCCCCCTATATATTTAATTTCTTA
TTTGTTTGTTTTGATTTTCTCCTCTTTTCTGTTGTGTGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_o13.b1 MSMg01no527_o13.b1 CHROMAT_FILE:
MSMg01no527_o13.b1 PHD_FILE: MSMg01no527_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:21 2005
         (355 letters)



>mm_chr11_94312688_94313439
          Length = 752

 Score =  638 bits (330), Expect = 0.0
 Identities = 343/348 (98%), Gaps = 3/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagaatgtccgagggtgggacagagccagaacacccaggcagggtgtgcccttg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaattctagaatgtcagagggtgggacagagccagaacacccaggcagggtgtgcccttg 490

                                                                       
Query: 65  ttctgtttcaatgtcagttcatgcctaataccaggagctgaactccaggggacaaggaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttctgtttcaatgtcagttcatgcctaataccaggagctgaactccaggggacaaggaga 430

                                                                       
Query: 125 ggagctctcacctccacacaacaggtgagggaggtggtatcagaaaggggcaggatgtgg 184
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggagctctcacctc--cacaacaggtgagggaggtggtatcagaaaggggcaggatgtgg 372

                                                                       
Query: 185 ggggccatccagctggcctagcttggaaatgtactgagtggcatataggcacaaggtgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggggccatccagctggcctagcttggaaatgtactgagtggcatataggcacaaggtgat 312

                                                                       
Query: 245 caaggcgagagtgacagggatgtcacaaggactctaagggagcctgagctgccagtaggt 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 311 caaggcgagagtgacagggatgtcacaaggactctaaggaagcctgagctgccagtaggt 252

                                                           
Query: 305 gcaggcctgttggggggggggggagaagggagctctctctatcactca 352
           ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 gcaggcctgtt-gggggggggggagaagggagctctctctatcactca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 752
Length adjustment: 9
Effective length of query: 346
Effective length of database: 743
Effective search space:   257078
Effective search space used:   257078
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)