BAC Information

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BAC

Clone NameMSMg01-529J20
Chromosome11 (Build37)
Map Location 87,626,022 - 87,811,788
singlet/doubletdoublet
Overlap geneLpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2
Upstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo
Downstream geneSfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529J20.T7 (MSMg01no529_j20.b1)MSMg01-529J20.TJ (MSMg01no529_j20.g1)
ACCAG598453AG598454
length818745
length of high quality
(start - end)		177 (71 - 247)669 (77 - 745)
definitionCHROMAT_FILE: MSMg01no529_j20.b1 PHD_FILE: MSMg01no529_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:40 2005CHROMAT_FILE: MSMg01no529_j20.g1 PHD_FILE: MSMg01no529_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,626,022 - 87,626,198)(87,811,223 - 87,811,788)
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCAACATTCCAGTGGAAATGACAAAGGCCAGAAGTAGAAA
AGATCAGTAGACTTCACTAATCTGTACAAAAGAGAGAAAGTAGGTGAATG
AAGAACTTTCAGGAGGTGGGTGGTAGTGGCGCACGCCTTTAATCCCAGCA
CTCAGGAGGCAGAGGCATGTGGATTTCTGAGTTCAAGGCCATTGTGGTCT
ACAGAGGTAGTTCCAGGATAGCCAAGGCTACACCGAGGAAACCCTGTCGC
AAAAAAACGAGTAACATGATAAGGAATATGATGAATATGACAGTAACAAT
GTGCAGAAATATAATTATATTTCCAAATCATCGATAAAGAAAGGAACCTC
TTGTTAACTAGACTGTTTTCCCCCCACTGGACATTATTATTACATCTTAC
TTGCTTTTTTTGCTTTTTTTTTTTTCAAACATCTTTTTTTCTTTTATACC
TTACTGGTTATTTCTGATAACCCTCTCTTATATAGTCTTCAAGTTTTTTT
TGCTTTTTTTTCACCCCTTTCTCTTTTTACATATTACTCCTTTTTCTTCT
CTTCTCCTCTCTTTTACCTTCGCCCTTCTTTTTTCACATCTCCCCTTCTA
CTTGATCTTCTTTCTCATTTTCTCACTTTTTGTCCTTTGCGACCTATTCC
TTTTTTCTTTCTTTTCCTTCTCTTCCACTGTTATAATACCTTATTGGATA
GCCTTATCTTCCCCTTTGCTGAGCGTTCTTTCCCACACTCTTCTTGTCTT
ATATTTTCTCTTATTGGN

ACCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGAGGAGCACCACATTTGAAGGATGG
GCAGAGGAAGAGGAGCCTGACAAGGAGACTGGAGGGAGTAATCAGAGAGG
TAGGAATAGGCCAGGGAAGTCCCATGTCACAGAGCCTAGAGAGGAGAAGC
CCAGACTGGGCCCTGGCCAAGAGTGAGAAGGCAGCCACTTCTGCTGGTTT
CTATAGGGGCTGAGAGCATCACAGAGCTCCAGAAAACAAATTTAGGTTTC
CATTGTCTCAGACCCTACTGGGTTAGCTTTCTGAAGCTGTGACAAAATGC
CTGTAGTAATCACCTTACAAGAAAGGAAAAGATTGGGTTTTGGCTCATGG
TTTCAGAGACCAGTCCATAGTCACTTGGTCCTGCTGCTTTGGATCTGCTC
CAGCCTAGTACATTCTGACAGGTACATCTTTGGCAGATACATCATGGTGG
TATCTCACACAGTCAAGAAGGGGAGAGAAATAGACAGAGGCAGAGAGCCA
ACCAGGATAACAATGCTCTTTCCAAATATTCCCTCCAAGAGGGCATCCCC
AATGGCCTACTCTCTTTATACCTGCCTCTTAGTCTCCACTACTGGTTAGG
CGCCGAACCTACCATAGGCAGTCCTTTAGATGTGCTTTCAAGATCGATGC
TATAACTCCTAAGGAAGGTTCATGGCACCATCTTCCTGGCATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_j20.b1 MSMg01no529_j20.b1 CHROMAT_FILE:
MSMg01no529_j20.b1 PHD_FILE: MSMg01no529_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:40 2005
         (177 letters)



>mm_chr11_87625822_87626398
          Length = 577

 Score =  335 bits (173), Expect = 1e-96
 Identities = 176/177 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggaaatgacaaaggccagaagtagaaaagatcagtagacttcactaatctgtacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggaaatgacaaaggccagaagtagaaaagatcagtagacttcactaatctgtacaaa 260

                                                                       
Query: 61  agagagaaagtaggtgaatgaagaactttcaggaggtgggtggtagtggcgcacgccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagaaagtaggtgaatgaagaactttcaggaggtgggtggtagtggcgcacgccttt 320

                                                                    
Query: 121 aatcccagcactcaggaggcagaggcatgtggatttctgagttcaaggccattgtgg 177
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aatcccagcactcaggaggcagaggcaggtggatttctgagttcaaggccattgtgg 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no529_j20.g1 MSMg01no529_j20.g1 CHROMAT_FILE:
MSMg01no529_j20.g1 PHD_FILE: MSMg01no529_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:40 2005
         (669 letters)



>mm_chr11_87811223_87812291
          Length = 1069

 Score = 1079 bits (558), Expect = 0.0
 Identities = 564/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagcaccacatttgaaggatgggcagaggaagaggagcctgacaaggagactggaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aggagcaccacatttgaaggatgggcagaggaagaggagcctgacaaggagactggaggg 507

                                                                       
Query: 61  agtaatcagagaggtaggaataggccagggaagtcccatgtcacagagcctagagaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtaatcagagaggtaggaataggccagggaagtcccatgtcacagagcctagagaggag 447

                                                                       
Query: 121 aagcccagactgggccctggccaagagtgagaaggcagccacttctgctggtttctatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagcccagactgggccctggccaagagtgagaaggcagccacttctgctggtttctatag 387

                                                                       
Query: 181 gggctgagagcatcacagagctccagaaaacaaatttaggtttccattgtctcagaccct 240
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 386 gggctgagagcatcacagagctccagaaaacaaatttaggcttctattgtctcagaccct 327

                                                                       
Query: 241 actgggttagctttctgaagctgtgacaaaatgcctgtagtaatcaccttacaagaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actgggttagctttctgaagctgtgacaaaatgcctgtagtaatcaccttacaagaaagg 267

                                                                       
Query: 301 aaaagattgggttttggctcatggtttcagagaccagtccatagtcacttggtcctgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaagattgggttttggctcatggtttcagagaccagtccatagtcacttggtcctgctg 207

                                                                       
Query: 361 ctttggatctgctccagcctagtacattctgacaggtacatctttggcagatacatcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctttggatctgctccagcctagtacattctgacaggtacatctttggcagatacatcatg 147

                                                                       
Query: 421 gtggtatctcacacagtcaagaaggggagagaaatagacagaggcagagagccaaccagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gtggtatctcacacagtcaagaaggggagagaaatagacagaggcagagagccaaccagg 87

                                                                       
Query: 481 ataacaatgctctttccaaatattccctccaagagggcatccccaatggcctactctctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ataacaatgctctttccaaatattccctccaagagggcatccccaatggcctactctctt 27

                                     
Query: 541 tatacctgcctcttagtctccactac 566
           ||||||||||||||||||||||||||
Sbjct: 26  tatacctgcctcttagtctccactac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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