BAC Information

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BAC

Clone NameMSMg01-530A22
Chromosome11 (Build37)
Map Location 60,945,691 - 61,033,154
singlet/doubletdoublet
Overlap geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1
Upstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12
Downstream geneAldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530A22.T7 (MSMg01no530_a22.b1)MSMg01-530A22.TJ (MSMg01no530_a22.g1)
ACCAG598788AG598789
length754757
length of high quality
(start - end)		704 (51 - 754)674 (78 - 751)
definitionCHROMAT_FILE: MSMg01no530_a22.b1 PHD_FILE: MSMg01no530_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:15 2005CHROMAT_FILE: MSMg01no530_a22.g1 PHD_FILE: MSMg01no530_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,945,691 - 60,946,378)(61,032,658 - 61,033,154)
sequence
NNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATGGCGTCTGCTTGCTAATATTTTTACCCTGTAACTATT
CATTCCAGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
TGTATCATCTATCTGTGTATCTATGTGTCTATCACCATAATAACTACCGT
TATCATTTTGCCTAAGTGCCAGGTTTGGGCCAGGCCTTTACTTTAATTTC
ATGTGTATGCAGCAACCGTGTTCACAGGTTCATGTTCACAGGGTGCTGAT
ACATAGTTTTTAGAGAATTGGATGAGGCATACTTGACCCAGAAGTAAATA
CCACAGGATCTGGGACTTGGAGTAATCAGCCAGAAGTTTTGTGTTGGTTT
GTTTTACCATGAAAAGGTGTTGGATTTTCTCAAAGGCTTTTCTGTACCCA
TTTGGCCGACTGTGTCGTTCCCTCTTAATTCTTTCATTGTTGGACACGGA
AGCGATGGCTCTTTGCAAAGCCGAATCCTTGGAGCAGCCTAAGCACAACC
CTCTTTTGATCACAGCGAATAACATGCTGCGGGGTGCATGTGCTGACATT
TTTTGAGGCGCTTGTCCCAGTATTCATAAGACATATTGGTCTGTGGTTTT
ATTTCTTTTAATGTCTCTTTGGGGCTTTGACATACGATGTATTTTGTCTG
ACAATAGTTGTAAATTTGCATCTGTTCTTTGGGCATGATTTGCATTTTTT
CCCT

NNGGCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTCTGTGACCGTATGACCT
AGATTAATATTAAATATTCTAAGTCCATCCCTTTTCATGAAAATATTTTA
GCTTCATTTTTCTTTAGAGCTGAGTAAGGAAGACATTTGGAGAAGTATGT
AGATATTCTCTCAAAAAGGGCAAAGGCCCTGTAGATGCTTGTCTCCCACG
TAAATGTCCATCCAAAGGTTGTGGGAAGCAAAGGAAGGCTTGGGTGCCTG
TGTAAAGAATTGCTAAATCCTGGGTGAATGTGTATTGTTGACCTGCCCAC
ATCAGCCTCCCAGGGCCTCAGACCCATGGATTGAAGACCAGCCTCTCTCT
AGGAGTCTTTGGAGCTCCTACAGCAGACTCAAACTGCTGTGACATCTAGT
CTGTAGACTGAACACTACTGGGTTCTGGACCTTTCTGTCAGGAGACAGAC
ATTGTTGGACTAGTGTACCATAGCCTATAAGCCACTCTAATAAGTCATGT
GTACATACTTCCTAACACAGCCATGCTAATTACATCTTCTTGCTCTGCCA
TTCATTGCTATTTGTCTTTTATTAGTATGTTCTGATTGGTGGAGTGGGTT
ACAATGAGAACAGTTGCCTAGGCTGCTTTCCAGGGACAAGTGTATGCTTT
TCTTGAAACCATACACTTGGGTCTGATGAGTCTGAAAACTACACTTTGGG
TTATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_a22.b1 MSMg01no530_a22.b1 CHROMAT_FILE:
MSMg01no530_a22.b1 PHD_FILE: MSMg01no530_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:15 2005
         (704 letters)



>mm_chr11_60945475_60946578
          Length = 1104

 Score = 1226 bits (634), Expect = 0.0
 Identities = 678/700 (96%), Gaps = 12/700 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatggcgtctgcttgctaatatttttaccctgtaactattcattccagtatgta 64
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 217 gaattcaatggcgtctggttgctaatatttttaccatgtaactattcattccagtatgta 276

                                                                       
Query: 65  tgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatcatctatctgtgtatctat 124
           |||||||||||||||||||||||||||||            |||||||||||||||||||
Sbjct: 277 tgtatgtatgtatgtatgtatgtatgtat------------catctatctgtgtatctat 324

                                                                       
Query: 125 gtgtctatcaccataataactaccgttatcattttgcctaagtgccaggtttgggccagg 184
           |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtctatcaccatgataactaccattgtcattttgcctaagtgccaggtttgggccagg 384

                                                                       
Query: 185 cctttactttaatttcatgtgtatgcagcaaccgtgttcacaggttcatgttcacagggt 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctttacttaaatttcatgtgtatgcagcaaccgtgttcacaggttcatgttcacagggt 444

                                                                       
Query: 245 gctgatacatagtttttagagaattggatgaggcatacttgacccagaagtaaataccac 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctgatacatagtttctagagaattggatgaggcatacttgacccagaagtaaataccac 504

                                                                       
Query: 305 aggatctgggacttggagtaatcagccagaagttttgtgttggtttgttttaccatgaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggatctgggacttggagtaatcagccagaagttttgtgttggtttgttttaccatgaaa 564

                                                                       
Query: 365 aggtgttggattttctcaaaggcttttctgtacccatttggccgactgtgtcgttccctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggtgttggattttctcaaaggcttttctgtacccatttggccgactgtgtcgttccctc 624

                                                                       
Query: 425 ttaattctttcattgttggacacggaagcgatggctctttgcaaagccgaatccttggag 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaattctttcattgttgtacacggaagcgatggctctttgcaaagccgaatccttggag 684

                                                                       
Query: 485 cagcctaagcacaaccctcttttgatcacagcgaataacatgctgcggggtgcatgtgct 544
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 cagcctaagcacaacccccttttgatcacagcgaataacatgctgtggggtgcatgtgct 744

                                                                       
Query: 545 gacattttttgaggcgcttgtcccagtattcataagacatattggtctgtggttttattt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacattttttgaggcgcttgtcccagtattcataagacatattggtctgtggttttattt 804

                                                                       
Query: 605 cttttaatgtctctttggggctttgacatacgatgtattttgtctgacaatagttgtaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttttaatgtctctttggggctttgacatacgatgtattttgtctgacaatagttgtaaa 864

                                                   
Query: 665 tttgcatctgttctttgggcatgatttgcattttttccct 704
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tttgcatctgttctttgggcatgatttgcattttttccct 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no530_a22.g1 MSMg01no530_a22.g1 CHROMAT_FILE:
MSMg01no530_a22.g1 PHD_FILE: MSMg01no530_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:15 2005
         (674 letters)



>mm_chr11_61032658_61033731
          Length = 1074

 Score =  930 bits (481), Expect = 0.0
 Identities = 493/497 (99%), Gaps = 1/497 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttttctgtgaccgtatgacctagattaatattaaatattctaagtccatcccttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atttttctgtgaccgtatgacctagattaatattaaatattctaagtccatcccttttca 438

                                                                       
Query: 61  tgaaaatattttagcttcatttttctttagagctgagtaaggaagacatttggagaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaaaatattttagcttcatttttctttagagctgagtaaggaagacatttggagaagta 378

                                                                       
Query: 121 tgtagatattctctcaaaaagggcaaaggccctgtagatgcttgtctcccacgtaaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtagatattctctcaaaaagggcaaaggccctgtagatgcttgtctcccacgtaaatgt 318

                                                                       
Query: 181 ccatccaaaggttgtgggaagcaaaggaaggcttgggtgcctgtgtaaagaattgctaaa 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 317 ccatccaaaggttgtgggaagctaaggaaggcttgggtgcctgtgtaaagaatggctaaa 258

                                                                       
Query: 241 tcctgggtgaatgtgtattgttgacctgcccacatcagcctcccagggcctcagacccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcctgggtgaatgtgtattgttgacctgcccacatcagcctcccagggcctcagacccat 198

                                                                       
Query: 301 ggattgaagaccagcctctctctaggagtctttggagctcctacagcagactcaaactgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggattgaagaccagcctctctctaggagtctttggagctcctacagcagactcaaactgc 138

                                                                       
Query: 361 tgtgacatctagtctgtagactgaac-actactgggttctggacctttctgtcaggagac 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 137 tgtgacatctagtctgtagactgaacaactactgggttctggacctttctgtcaggagac 78

                                                                       
Query: 420 agacattgttggactagtgtaccatagcctataagccactctaataagtcatgtgtacat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  agacattgttggactagtgtaccatagcctataagccactctaataagtcatgtgtacat 18

                            
Query: 480 acttcctaacacagcca 496
           |||||||||||| ||||
Sbjct: 17  acttcctaacacggcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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