Query= MSMg01no530_e08.b1 MSMg01no530_e08.b1 CHROMAT_FILE:
MSMg01no530_e08.b1 PHD_FILE: MSMg01no530_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:32 2005
(688 letters)
>mm_chr11_23602697_23603788
Length = 1092
Score = 1189 bits (615), Expect = 0.0
Identities = 661/693 (95%), Gaps = 29/693 (4%)
Strand = Plus / Plus
Query: 1 agtctgtccctgggaagaaatgatgtagtccagctgaaagaagcctacaagtggataact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctgtccctgggaagaaatgatgtagtccagctgaaagaagcctacaagtggataact 260
Query: 61 caccccctgttttcagaggagctgggcgttcccactgatggaaaggtatcagacaatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccccctgttttcagaggagctgggcgttcccactgatggaaaggtatcagacaatggc 320
Query: 121 cagtggcactagtgacctctgggtcattgcttcacctcattaatgctggatacctggtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtggcactagtgacctctgggtcattgcttcacctcattaatgctggatacctggtta 380
Query: 181 ccagaagcttatataactctg----tgaaggtctctgaaggttttaaatgttcatttaga 236
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaagcttatataactctgtctctgaaggtctctgaaggttttaaatgttcatttaga 440
Query: 237 actctctaaattgatgttaaggcctcttatttgtgatccaggacacttagaaagataaca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctctaaattgatgttaaggcctcttatttgtgatccaggacacttagaaagataaca 500
Query: 297 aatactgggaacacattaaccttaaaattctagaactgaatctttacttggcatgtactt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatactgggaacacattaaccttaaaattctagaactgaatctttacttggcatgtactt 560
Query: 357 gtagtttagctggaaggacagatttactgatacaaagcaatcaatctattaaaacctgag 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gtagtttagctggaaggacagatttactgatacaaagcaatcagtctattaaaacctgag 620
Query: 417 cagggagccaggaagatggctccgtgggtaaaggtgcttgccatgacgcctcatgacctg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagggagccaggaagatggctccgtgggtaaaggtgcttgccatgacgcctcatgacctg 680
Query: 477 accagttctttttgttttttctttctttctttttttttattacgtattttcctcaattac 536
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 accagttcttttt-----------------ttttttttattacgtattttcctcaattac 723
Query: 537 atttccaatgctatcccaaaag-tcccccacaccctcccccccactcccctacccaccca 595
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 724 atttccaatgctatcccaaaaggtccccc-------cccccccactcccctacccaccca 776
Query: 596 ttcccattttttggccctggcgttcccatgtactggggcatataaagtttgcctgaccaa 655
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttcccattttttggccctggtgttcccatgtactggggcatataaagtttgcctgaccaa 836
Query: 656 tgggcctctctttccagtgatggccgactaggc 688
|||||||||||||||||||||||| ||||||||
Sbjct: 837 tgggcctctctttccagtgatggctgactaggc 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1092
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1082
Effective search space: 733596
Effective search space used: 733596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_e08.g1 MSMg01no530_e08.g1 CHROMAT_FILE:
MSMg01no530_e08.g1 PHD_FILE: MSMg01no530_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:32 2005
(610 letters)
>mm_chr11_23790065_23791069
Length = 1005
Score = 1129 bits (584), Expect = 0.0
Identities = 602/610 (98%), Gaps = 5/610 (0%)
Strand = Plus / Minus
Query: 1 cattttctggggaagactgagacaggcaagtttggaagaatcaggagatagtttctcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cattttctggggaagactgagacaggcaagtttggaagaatcaggagatagtttctcgtt 746
Query: 61 tataggatgcctaaacgcatctctctctctattgttcttttttaatgtgagtgtttatgc 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 tataggatgcctaaacgcatctctctctctattgttcttttttaat----gtgtttatgc 690
Query: 121 cattggttttaagtttaataatatcaaactgtattagttaagtactatttcataaaaatt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 689 cattggttttaagtttaataatatcaaactgcattagttaagtactatttcataaaaatt 630
Query: 181 agccagtaattaacttacctattttaattatatataaccccagtaccagtgagagtacca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agccagtaattaacttacctattttaattatatataaccccagtaccagtgagagtacc- 571
Query: 241 agtgagagagaatctagtctctagtatcacaatgagttgatgtaattctgttgtaaagcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agtgagagagaatctagtctctagtatcacaatgagttgatgtaattctgttgtaaagcg 511
Query: 301 gacttgacaattcagtttgcctctgtagcctgattgaaggtaacttagtgatttatatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gacttgacaattcagtttgcctctgtagcctgattgaaggtaacttagtgatttatatta 451
Query: 361 gattttttaatatttgaagacaattcaaagaccaatctattatcacatttatcatgtctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gattttttaatatttgaagacaattcaaagaccaatctattatcacatttatcatgtctg 391
Query: 421 gcactcttagatctttcagatgtatgaggtatcaacagatgtgatagcatgaacatatat 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcactcttagatcttttagatgtatgaggtatcaacagatgtgatagcatgaacatatat 331
Query: 481 atgatatgaatttaacagagcatcaacatcaagtttctacctgtgtgtttatttctttaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgatatgaatttaacagagcatcaacatcaagtttctacctgtgtgtttatttctttaa 271
Query: 541 tgttgtttaaaagtttaacgttctcatcttttattataggctggttgttcttggtaaatt 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgttgtttaaaagtttaaagttctcatcttttattataggctggttgttcttggtaaatt 211
Query: 601 gaacaattta 610
||||||||||
Sbjct: 210 gaacaattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1005
Length adjustment: 10
Effective length of query: 600
Effective length of database: 995
Effective search space: 597000
Effective search space used: 597000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
