Query= MSMg01no530_o15.b1 MSMg01no530_o15.b1 CHROMAT_FILE:
MSMg01no530_o15.b1 PHD_FILE: MSMg01no530_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:23 2005
(675 letters)
>mm_chr11_116260076_116261150
Length = 1075
Score = 1035 bits (535), Expect = 0.0
Identities = 580/602 (96%), Gaps = 14/602 (2%)
Strand = Plus / Plus
Query: 1 agacaggaactactgagccgcgagtggtggagcatgccgttaatcccagcgctcaggagg 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 195 agacaggaactactgagccgcgagtggtggagcacgccgttaatcccagcgctcgggagg 254
Query: 61 cagaggcaggcggatttctgagttcgaggccagcctggtctacagagtgagttccaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cagaggcaggcggatttctgagttcgaggccagcctggtctacagagtgagttccaggac 314
Query: 121 agc------tacacagagaaaccctgtctcgaaaaaccagacaagtagggtgggagatca 174
||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 agccagggctacacggagaaaccctgtctcgaaaaaccagacaagtggggtgggagatca 374
Query: 175 ctgggactgattggtttacatagcacagtgatctatctaactctgaaagccaggagctct 234
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgggactgattggtttacgtagcacagtgatctatctaactctgaaagccaggagctct 434
Query: 235 aacaaccctaggcttttt----gtcaagcaggcggcagggttctactagaaatgcatttt 290
||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 435 aacaaccctaggcat---cagggt-aagcaggcggcagggttctactagaaatgcatttt 490
Query: 291 gcctttccttcttctgagacaggcttatataacatgccgacctcaaagtcattaggtagc 350
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 491 gcctttccttcttctgagacaggcttatgtaacatgccgacctcaaagtcattaggtagc 550
Query: 351 cgagggagacattgaactgctggctcttctgcctctacctcctacgtgctgagatcgcag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cgagggagacattgaactgctggctcttctgcctctacctcctacgtgctgagatcgcag 610
Query: 411 gtctctgccaccatgcctggcgaatctcaccaaattttataagaagggggtgaggacggt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtctctgccaccatgcctggcgaatctcaccaaattttataagaagggggtgaggacggt 670
Query: 471 ggtggcctgcctttaatcccgatactcgggcagcagaagcagttggatgtctgtgatcac 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggtggcctgcctttaatcccgatactcgggcagcagaagcagttggatgtctgtgatcac 730
Query: 531 tgggagttccaggccagccactctgtatatagagagaacctgtctcanaaagatacataa 590
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 731 tgggagttccaggccagccactctgtatatagagagaacctgtctcaaaaagatacataa 790
Query: 591 ag 592
||
Sbjct: 791 ag 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_o15.g1 MSMg01no530_o15.g1 CHROMAT_FILE:
MSMg01no530_o15.g1 PHD_FILE: MSMg01no530_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:23 2005
(667 letters)
>mm_chr11_116435104_116436170
Length = 1067
Score = 1129 bits (584), Expect = 0.0
Identities = 612/632 (96%), Gaps = 17/632 (2%)
Strand = Plus / Minus
Query: 1 cctggaacctatttggggcccacgtttttaaaaaagaagtacaagtatcatgtgtaatgt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 632 cctggaacctatttggggcccacgttttttaaaaagaagtacaagtatcatgtgtaatgt 573
Query: 61 gaatgactgtggacacgtgacagtgtcagctgcctctgtgatcccctcagagtgggagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaatgactgtggacacgtgacagtgtcagctgcctctgtgatcccctcagagtgggagtc 513
Query: 121 aggacagttgtgggtttctcccagaacaacatgatctaaactcctgttaggtccgtggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aggacagttgtgggtttctcccagaacaacatgatctaaactcctgttaggtccgtggga 453
Query: 181 actttgagaccctggtctgtgactagcctctttcttgggactgctaatcaggcctgacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 actttgagaccctggtctgtgactagcctctttcttgggactgctaatcaggcctgacag 393
Query: 241 tctaaagtgaggaaatggcccttgggaaggtgtaagagcatccagctcaggcgctgtcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tctaaagtgaggaaatggcccttgggaaggtgtaagagcatccagctcaggcgctgtcac 333
Query: 301 tgtcctttctcagtaggagtttggtagttttgattagctccttcctcagactttgtctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtcctttctcagtaggagtttggtagttttgattagctccttcctcagactttgtctaa 273
Query: 361 tggcctggggtaggggggtcaggaagggaagggggcagtggtggagatgtacgt------ 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggcctggggtaggggggtcaggaagggaagggggcagtggtggagatgtacgtcagtgc 213
Query: 415 -----------cagtgctgcagcagccccggaacattcttttgctgagcagtagtgccct 463
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tgcagcagccccagtgctgcagcagccccggaacattcttttgctgagcagtagtgccct 153
Query: 464 ttagaacccctccagacctgacatctcagcctgccccggggtctgttagggaccacccga 523
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 152 ttagaacccctccggacctgacatctcagcctgccccggggtctgttaggaaccacccga 93
Query: 524 tgtgtggttggctatatggggaagagccaagtgcttactggaatttttttgtagatcaga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tgtgtggttggctatatggggaagagccaagtgcttactggaatttttttgtagatcaga 33
Query: 584 gtaaaattgaatcacattaatggctgtctgaa 615
||||||||||||||||||||||||||||||||
Sbjct: 32 gtaaaattgaatcacattaatggctgtctgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
