BAC Information

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BAC

Clone NameMSMg01-530P01
Chromosome11 (Build37)
Map Location 117,881,956 - 118,035,001
singlet/doubletdoublet
Overlap genePgs1, Dnahc17, Pscd1
Upstream geneLOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3
Downstream geneUsp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530P01.T7 (MSMg01no530_p01.b1)MSMg01-530P01.TJ (MSMg01no530_p01.g1)
ACCAG599460AG599461
length759775
length of high quality
(start - end)		664 (75 - 738)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no530_p01.b1 PHD_FILE: MSMg01no530_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:25 2005CHROMAT_FILE: MSMg01no530_p01.g1 PHD_FILE: MSMg01no530_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,881,956 - 117,882,619)(118,034,360 - 118,035,001)
sequence
AACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCAAGGCCATTTTCGTCTCCAGTATGAGTTCTAACACAGTCAGGAC
TATACAGAGAAACCCTGTCTGGAAAAACAAAATAACCTTTAATCACTATT
TTAGTTATTTTTCAGTCATTCTTAAATATTATACGAAAGTAGAATGAGAT
GTACCTGAGGGCCAGCCTCCCTCCAGCAGCCACTCTGCCAGGCTGGTGAC
ACATGTCCATATGTCTCTAAACCCAGTGCCTACCGTTTCCATCACACTCT
ATACAGATGAATTCCTAACCAGACAATGTGCGTAAGCCTGGAGAAATAAG
ACTGGGCTGGCCTCAAATTCATGGTAATCCTCCTGCCTCAATCCCTCAAG
TGTTAGGATCACTTGCATGTACCACTGAACCTGGCTCATTTTAGTGTTTT
TGGTTTGACATGAGATTTGAAGTTACTATTGCTGTTGCTTTTTGGGGGTG
GGGGATGGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA
ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTGCCTGCCTC
TGCCTCCCGAGTGCTGGGGTTAAAGGTGTGCACTACCACCATCTAGTTAG
GTTCCAGCTTATAATAGATAAGCCGGTTCAAATGTTGTGTCCCTCCTCAC
AGCAGGTCCCCTCCAGTGCACTTTGAGAAGCCTGCTCTCTTGTCCATTCC
TCCCCAGGT

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTGTTGGGAAGCACAGTTCTCGTGC
ACTGCACCTTCTGTGCAATGTGCATAGTGAGTGTCTTGGCTTACTTCAGC
CACTACCAGCCTGCGGAACCCCGGGGGAGATCAGCAGAGGCCCAGGGGTC
TCCCTGGGCTGGTCACAAGGGCCTTCATAGCTGGTCCTCACTCCTGGGCA
GAAGATGGCGTTAGCCCTAGCTGCATATCCAGAGCACGGCTCGTGTACCT
CCTGCCCCTGAGTCTAGAGAGTGAAGAAGCTATGGCTTCACGGGGGTCTG
CATTAGGATGACTTGACTCAGCCCACTTCGGCATCAGAATTCTTAAGAGG
TTTGGCACCGTGTGGCTTGGAAAGGAGAGTGGAGAGGAAAGAAAGGAATG
GGGAAGTAGGCCAGGAATTATTGAGGAAGCCCAGTGGCTGTCCTCCCTGC
TGCAGCCTGGGAGGAATACTGCAAGTCTCTGGACCAGGGGATCCCCTTAG
CACTGTTAAGGGTGGGGCATTACATGTGCATAGAAGGATTAGGGGAACTG
TGGGTAATGCATCGTCTTCCCTCGTAGTGGCCATTGTGAGTGGCCGATGC
CCCAGAGAGGGCTGCAAGGATCTCAGGCAGACTCAGTGGTCAGCCTGACA
GGAGCCTCGTGAGAAGAGAGCCTGGTACCCACAGCTTACTCAGCTTAGTC
ACCACTCTGCAAATGACACAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_p01.b1 MSMg01no530_p01.b1 CHROMAT_FILE:
MSMg01no530_p01.b1 PHD_FILE: MSMg01no530_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:25 2005
         (664 letters)



>mm_chr11_117881756_117882819
          Length = 1064

 Score = 1191 bits (616), Expect = 0.0
 Identities = 652/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgagttctaacacagtcaggactatacagagaaaccctgtctggaaaaacaaaata 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatgagttctaacacagccaggactatacagagaaaccctgtctggaaaaacaaaata 260

                                                                       
Query: 61  acctttaatcactattttagttatttttcagtcattcttaaatattatacgaaagtagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctttaatcactattttagttatttttcagtcattcttaaatattatacgaaagtagaa 320

                                                                       
Query: 121 tgagatgtacctgagggccagcctccctccagcagccactctgccaggctggtgacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagatgtacctgagggccagcctccctccagcagccactctgccaggctggtgacacat 380

                                                                       
Query: 181 gtccatatgtctctaaacccagtgcctaccgtttccatcacactctatacagatgaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccatatgtctctaaacccagtgcctaccgtttccatcacactctatacagatgaattc 440

                                                                       
Query: 241 ctaaccagacaatgtgcgtaagcctggagaaataagactgggctggcctcaaattcatgg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ctaaccagacaatgtgcgtaagcctggagaaataagactgggctggcctcaagttcatgg 500

                                                                       
Query: 301 taatcctcctgcctcaatccctcaagtgttaggatcacttgcatgtaccactgaacctgg 360
            |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 501 caatcctcctgcctcgatccctcaagtgttaggaccacttgcatgtaccactgaacccgg 560

                                                                       
Query: 361 ctcattttagtgtttttggtttgacatgagatttgaagttactattgctgttgctttttg 420
           |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 ctcattgtagtgttcttggtttgacatgagatctgaagttactattgctgttgctttttg 620

                                                                       
Query: 421 ggggtgggggatggttttgagacagggtttctctgtgtagccctggctgtcctggaactc 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggtgggggatggtttcgagacagggtttctctgtgtagccctggctgtcctggaactc 680

                                                                       
Query: 481 actctgtagaccaggctggcctcgaactcagagatctgcctgcctctgcctcccgagtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actctgtagaccaggctggcctcgaactcagagatctgcctgcctctgcctcccgagtgc 740

                                                                       
Query: 541 tggggttaaaggtgtgcactaccaccatctagttaggttccagcttataatagataagcc 600
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 tggggttaaaggcgtgcactaccaccatctagttaggttccagcttatgatagataagcc 800

                                                                       
Query: 601 ggttcaaatgttgtgtccctcctcacagcaggtcccctccagtgcactttgagaagcctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggttcaaatgttgtgtccctcctcacagcaggtcccctccagtgcactttgagaagcctg 860

               
Query: 661 ctct 664
           ||||
Sbjct: 861 ctct 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_p01.g1 MSMg01no530_p01.g1 CHROMAT_FILE:
MSMg01no530_p01.g1 PHD_FILE: MSMg01no530_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:25 2005
         (642 letters)



>mm_chr11_118034160_118035201
          Length = 1042

 Score = 1234 bits (638), Expect = 0.0
 Identities = 641/642 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgttgggaagcacagttctcgtgcactgcaccttctgtgcaatgtgcatagtgagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 agttgttgggaagcacagttctcgtgcactgcaccttctgtgcaatgtgcatagtgagtg 783

                                                                       
Query: 61  tcttggcttacttcagccactaccagcctgcggaaccccgggggagatcagcagaggccc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 782 tcttggcttacttcagccactaccagcctgcggaaccccaggggagatcagcagaggccc 723

                                                                       
Query: 121 aggggtctccctgggctggtcacaagggccttcatagctggtcctcactcctgggcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aggggtctccctgggctggtcacaagggccttcatagctggtcctcactcctgggcagaa 663

                                                                       
Query: 181 gatggcgttagccctagctgcatatccagagcacggctcgtgtacctcctgcccctgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gatggcgttagccctagctgcatatccagagcacggctcgtgtacctcctgcccctgagt 603

                                                                       
Query: 241 ctagagagtgaagaagctatggcttcacgggggtctgcattaggatgacttgactcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctagagagtgaagaagctatggcttcacgggggtctgcattaggatgacttgactcagcc 543

                                                                       
Query: 301 cacttcggcatcagaattcttaagaggtttggcaccgtgtggcttggaaaggagagtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cacttcggcatcagaattcttaagaggtttggcaccgtgtggcttggaaaggagagtgga 483

                                                                       
Query: 361 gaggaaagaaaggaatggggaagtaggccaggaattattgaggaagcccagtggctgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaggaaagaaaggaatggggaagtaggccaggaattattgaggaagcccagtggctgtcc 423

                                                                       
Query: 421 tccctgctgcagcctgggaggaatactgcaagtctctggaccaggggatccccttagcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tccctgctgcagcctgggaggaatactgcaagtctctggaccaggggatccccttagcac 363

                                                                       
Query: 481 tgttaagggtggggcattacatgtgcatagaaggattaggggaactgtgggtaatgcatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgttaagggtggggcattacatgtgcatagaaggattaggggaactgtgggtaatgcatc 303

                                                                       
Query: 541 gtcttccctcgtagtggccattgtgagtggccgatgccccagagagggctgcaaggatct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtcttccctcgtagtggccattgtgagtggccgatgccccagagagggctgcaaggatct 243

                                                     
Query: 601 caggcagactcagtggtcagcctgacaggagcctcgtgagaa 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caggcagactcagtggtcagcctgacaggagcctcgtgagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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