BAC Information

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BAC

Clone NameMSMg01-532C04
Chromosome11 (Build37)
Map Location 54,369,189 - 54,504,934
singlet/doubletdoublet
Overlap geneRapgef6
Upstream geneKif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532C04.T7 (MSMg01no532_c04.b1)MSMg01-532C04.TJ (MSMg01no532_c04.g1)
ACCAG600367AG600368
length747753
length of high quality
(start - end)		645 (50 - 694)647 (82 - 728)
definitionCHROMAT_FILE: MSMg01no532_c04.b1 PHD_FILE: MSMg01no532_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:59 2005CHROMAT_FILE: MSMg01no532_c04.g1 PHD_FILE: MSMg01no532_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,504,295 - 54,504,934)(54,369,189 - 54,369,836)
sequence
GGAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGAAGTCTCAGCTTTTTTGATTTTGAAGGCTTTGGAAGTT
GTCATGGGAGCTGCTGGAACAGGAAGTCCAACTGCCCCGCCCACTGTCAG
CTGCTTCCAGCACAACATGCTCATGAGACATCTCTTCGCTGCTCAGAGAA
GATGAGACAGCTACACCCTTGATAAGACACGGCTTTGACAGCATCCACCT
GAAAGTGGGGACAAACAGATGAGCAATGAGTAATCTGGTGGTATACTGGA
GACTCCTCAGCACATGGCCCCAGGACACACCTGAATCCTTAGCTAGGCAA
TGTTTCCTCTAAGAAATCCTGACTGACTTTAAATAAAAGTACAAGATGAA
ATTTGAAATTGGCATTTGACATCCTTTTTTTTTGAAGGAGGGACAGACTC
AATTGTGCTTTTCTTGAATGTCAATTTTTTTTTTCTTTAAGAAAACAACA
GTCTCAATGTCAAAAGGCTAAACATGGGAATTCAGACCAAGGCCTGGCCC
TACTCTCCTAGCTCTTGCATTGTGCTGGACAGACATGCTGGCCTGGAAGT
CTGCTGTACGGTGAAATCTTTCTCCAGGAGCCACACCACTAGTAACAGCA
GCAGGTGCACAGGATTCTTAGTGAGTGACGAGATACATGGCAGAAAGTAA
CCTGAATAAAGAGAGTTCAGGAACATACAAAAAGGGTATCTACCAGG

GGAGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTTCAGCAAAAACTA
GGCTGCTCTGGGTTCTTTATCTGATAGTGGGAGCTGAACTTTATTGTATA
ATGTTCTTGATTGTCTTGCCTTTTTTGTTGTTTTAGTTGTTGCTGTTCTA
GACATAAGAGTTCTTCTAGCTACAGTTGTGTGCCACAAACCCAATTTCTT
CTTTGTAATTGGGGTTAGTCACTTTTGACAATAGAATAACATCTGTTTGC
TGCCTATTGGTTTAGTGGCTAGGGAGAAAAAAGATTGTGTTCTCCTGGTA
AAAGCATTAAGACTAACCAAGCAAAGTTCAGAGTTGGTAGGAAGCAAGAA
AAAATACTATAAATAAGTTGTTAGATTAAAACACTGAGAATACTGGGAAA
AGCAAAGCATTGTTATAGCTGTTTTGCCAAAAAAAAAAAAAAATGAGTTT
CTTGATTGAAGGTAATGCAATCTGCAGTGCCAGATAAGAAAATATACTCT
GTAAGCTCATGATGGTTAGCAGTACTAGCATAATCTAGAATGTGTTTGGT
GAGGACAAATAACCTGACTCCTCCGTAATTGACGCGATCGATTATAAATT
ACGTGGCTCCTATAGTTGTCTTGTCCCCTTGAGAAATGCTAACATATTAG
GAACTCAGTATTGTTCCTACTTCTGAAAAAATAGGTACTCAGATGTAATT
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_c04.b1 MSMg01no532_c04.b1 CHROMAT_FILE:
MSMg01no532_c04.b1 PHD_FILE: MSMg01no532_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:59 2005
         (645 letters)



>mm_chr11_54504091_54505134
          Length = 1044

 Score = 1224 bits (633), Expect = 0.0
 Identities = 639/641 (99%), Gaps = 1/641 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggaagtctcagcttttttgattttgaaggctttggaagttgtcatgggagctg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaattcaggaagtcccagcttttttgattttgaaggctttggaagttgtcatgggagctg 785

                                                                       
Query: 65  ctggaacaggaagtccaactgccccgcccactgtcagctgcttccagcacaacatgctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ctggaacaggaagtccaactgccccgcccactgtcagctgcttccagcacaacatgctca 725

                                                                       
Query: 125 tgagacatctcttcgctgctcagagaagatgagacagctacacccttgataagacacggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tgagacatctcttcgctgctcagagaagatgagacagctacacccttgataagacacggc 665

                                                                       
Query: 185 tttgacagcatccacctgaaagtggggacaaacagatgagcaatgagtaatctggtggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttgacagcatccacctgaaagtggggacaaacagatgagcaatgagtaatctggtggta 605

                                                                       
Query: 245 tactggagactcctcagcacatggccccaggacacacctgaatccttagctaggcaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tactggagactcctcagcacatggccccaggacacacctgaatccttagctaggcaatgt 545

                                                                       
Query: 305 ttcctctaagaaatcctgactgactttaaataaaagtacaagatgaaatttgaaattggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttcctctaagaaatcctgactgactttaaataaaagtacaagatgaaatttgaaattggc 485

                                                                       
Query: 365 atttgacatcctttttttttgaaggagggacagactcaattgtgcttttcttgaatgtca 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atttgacatcc-ttttttttgaaggagggacagactcaattgtgcttttcttgaatgtca 426

                                                                       
Query: 425 attttttttttctttaagaaaacaacagtctcaatgtcaaaaggctaaacatgggaattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attttttttttctttaagaaaacaacagtctcaatgtcaaaaggctaaacatgggaattc 366

                                                                       
Query: 485 agaccaaggcctggccctactctcctagctcttgcattgtgctggacagacatgctggcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agaccaaggcctggccctactctcctagctcttgcattgtgctggacagacatgctggcc 306

                                                                       
Query: 545 tggaagtctgctgtacggtgaaatctttctccaggagccacaccactagtaacagcagca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggaagtctgctgtacggtgaaatctttctccaggagccacaccactagtaacagcagca 246

                                                    
Query: 605 ggtgcacaggattcttagtgagtgacgagatacatggcaga 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggtgcacaggattcttagtgagtgacgagatacatggcaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_c04.g1 MSMg01no532_c04.g1 CHROMAT_FILE:
MSMg01no532_c04.g1 PHD_FILE: MSMg01no532_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:59 2005
         (647 letters)



>mm_chr11_54368989_54370036
          Length = 1048

 Score = 1230 bits (636), Expect = 0.0
 Identities = 645/648 (99%), Gaps = 1/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccttcagcaaaaactaggctgctctgggttctttatctgatagtgggagctgaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccttcagcaaaaactaggctgctctgggttctttatctgatagtgggagctgaactt 260

                                                                       
Query: 61  tattgtataatgttcttgattgtcttgccttttttgttgttttagttgttgctgttctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgtataatgttcttgattgtcttgccttttttgttgttttagttgttgctgttctag 320

                                                                       
Query: 121 acataagagttcttctagctacagttgtgtgccacaaacccaatttcttctttgtaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataagagttcttctagctacagttgtgtgccacaaacccaatttcttctttgtaattg 380

                                                                       
Query: 181 gggttagtcacttttgacaatagaataacatctgtttgctgcctattggtttagtggcta 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggttagtcacttgtgacaatagaataacatctgtttgctgcctattggtttagtggcta 440

                                                                       
Query: 241 gggagaaaaaagattgtgttctcctggtaaaagcattaagactaaccaagcaaagttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggagaaaaaagattgtgttctcctggtaaaagcattaagactaaccaagcaaagttcag 500

                                                                       
Query: 301 agttggtaggaagcaagaaaaaatactataaataagttgttagattaaaacactgagaat 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttggtaggaagcaagcaaaaatactataaataagttgttagattaaaacactgagaat 560

                                                                       
Query: 361 actgggaaaagcaaagcattgttatagctgttttgccaaaaaaaaaaaaaaa-tgagttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 actgggaaaagcaaagcattgttatagctgttttgccaaaaaaaaaaaaaaaatgagttt 620

                                                                       
Query: 420 cttgattgaaggtaatgcaatctgcagtgccagataagaaaatatactctgtaagctcat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgattgaaggtaatgcaatctgcagtgccagataagaaaatatactctgtaagctcat 680

                                                                       
Query: 480 gatggttagcagtactagcataatctagaatgtgtttggtgaggacaaataacctgactc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatggttagcagtactagcataatctagaatgtgtttggtgaggacaaataacctgactc 740

                                                                       
Query: 540 ctccgtaattgacgcgatcgattataaattacgtggctcctatagttgtcttgtcccctt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccgtaattgacgcgatcgattataaattacgtggctcctatagttgtcttgtcccctt 800

                                                           
Query: 600 gagaaatgctaacatattaggaactcagtattgttcctacttctgaaa 647
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagaaatgctaacatattaggaactcagtattgttcctacttctgaaa 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space:   661206
Effective search space used:   661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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