MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-532F02
Chromosome	11 (Build37)
Map Location	109,611,474 - 109,611,997
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ccdc46, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169
Downstream gene	1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ccdc46 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76380 MGI:1923673
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC629945 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Axin2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12006 MGI:1270862
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E030025P04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268498 MGI:2685510
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC194985 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:194985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 24 Proteins pseudo : _no_value

name	Rgs9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19739 MGI:1338824
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700096J18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67927 MGI:1915177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs

name	Gna13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14674 MGI:95768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9930022D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320509 MGI:2444178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	X83328 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13929 MGI:104837
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc16a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Arsg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74008 MGI:1921258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wipi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52639 MGI:1261864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkar1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19084 MGI:104878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC029169 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208659 MGI:2388266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700012B07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69324 MGI:1916574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein

name	1700023C21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73257 MGI:1920507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041492 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Abca8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27404 MGI:1351668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca8a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217258 MGI:2386846
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217262 MGI:2386796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76184 MGI:1923434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abca5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217265 MGI:2386607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map2k6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26399 MGI:1346870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661051 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_029606.3

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661053 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_145688.2

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661055 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_029586.2

name	LOC629945 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262550 GeneID:629945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : similar to splicing factor, arginine/serine-rich 12 transcript_id : XM_001480021.1

name	Axin2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254369 GeneID:12006 MGI:1270862
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : axin2 transcript_id : NM_015732.3

name	E030025P04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390906 GeneID:268498 MGI:2685510
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA E030025P04 gene transcript_id : XM_196056.4

name	Rgs9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755319 GeneID:19739 MGI:1338824
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 9 transcript_id : NM_011268.1

name	1700096J18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149262552 GeneID:67927 MGI:1915177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs product : RIKEN cDNA 1700096J18 gene transcript_id : XM_001480042.1

name	Gna13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89001108 GeneID:14674 MGI:95768
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, alpha 13 transcript_id : NM_010303.3

name	X83328 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115496472 GeneID:13929 MGI:104837
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EST X83328 transcript_id : NM_025275.4

name	Slc16a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71067106 GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 6 transcript_id : NM_001029842.1

name	Slc16a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71067108 GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 6 transcript_id : NM_134038.2

name	Arsg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607164 GeneID:74008 MGI:1921258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arylsulfatase G transcript_id : NM_028710.2

name	Wipi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130229 GeneID:52639 MGI:1261864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain, phosphoinositide interacting 1 transcript_id : NM_145940.2

name	Prkar1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364451 GeneID:19084 MGI:104878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, cAMP dependent regulatory, type I, alpha transcript_id : NM_021880.2

name	BC029169 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24418882 GeneID:208659 MGI:2388266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC029169 transcript_id : NM_153782.1

name	1700012B07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94391041 GeneID:69324 MGI:1916574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein product : RIKEN cDNA 1700012B07 gene, transcript variant 2 transcript_id : XM_895288.2

name	1700023C21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390908 GeneID:73257 MGI:1920507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700023C21 gene transcript_id : XM_987400.1

name	Abca8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956075 GeneID:27404 MGI:1351668
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 8b transcript_id : NM_013851.1

name	Abca8a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:53749663 GeneID:217258 MGI:2386846
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 8a transcript_id : NM_153145.2

name	Abca9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22267465 GeneID:217262 MGI:2386796
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette transporter sub-family A member 9 transcript_id : NM_147220.1

name	Abca6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22267461 GeneID:76184 MGI:1923434
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 6 transcript_id : NM_147218.1

name	Abca5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22267467 GeneID:217265 MGI:2386607
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family A (ABC1), member 5 transcript_id : NM_147219.1

name	Map2k6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802082 GeneID:26399 MGI:1346870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase 6 transcript_id : NM_011943.2

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125661052 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : coiled-coil domain containing 46 isoform 2 protein_id : NP_083882.3

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125661054 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : coiled-coil domain containing 46 isoform 3 protein_id : NP_663721.2

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21729780 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : coiled-coil domain containing 46 isoform 1 protein_id : NP_083862.1

name	LOC629945 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262551 GeneID:629945
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480071.1

name	Axin2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254370 CCDS:CCDS25575.1 GeneID:12006 MGI:1270862
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007222 - frizzled signaling pathway [Evidence IEA]; GO:0001957 - intramembranous ossification [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0045668 - negative regulation of osteoblast differentiation [Evidence IMP]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0030111 - regulation of Wnt receptor signaling pathway [Evidence IDA]; GO:0001756 - somitogenesis [Evidence IDA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 product : axin2 protein_id : NP_056547.3

name	E030025P04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82935421 GeneID:268498 MGI:2685510
definition	codon_start : 1 product : hypothetical protein protein_id : XP_196056.2

name	Rgs9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755320 CCDS:CCDS25576.1 GeneID:19739 MGI:1338824
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ROS GAP product : regulator of G-protein signaling 9 protein_id : NP_035398.1

name	1700096J18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149262553 GeneID:67927 MGI:1915177
definition	codon_start : 1 product : hypothetical protein LOC67927 protein_id : XP_001480092.1

name	Gna13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89001109 CCDS:CCDS25577.1 GeneID:14674 MGI:95768
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence TAS] [Evidence ISS]; GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IDA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence TAS]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030168 - platelet activation [Evidence IMP]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0008360 - regulation of cell shape [Evidence IDA]; GO:0007266 - Rho protein signal transduction [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : guanine nucleotide binding protein, alpha 13 protein_id : NP_034433.3

name	X83328 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75812978 CCDS:CCDS25579.1 GeneID:13929 MGI:104837
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : archaemetzincins-2 protein_id : NP_079551.3

name	Slc16a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71067107 CCDS:CCDS25580.1 GeneID:104681 MGI:2144585
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; monocarboxylate transporter 6 product : solute carrier family 16, member 6 isoform a protein_id : NP_001025013.1

name	Slc16a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527254 GeneID:104681 MGI:2144585
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; monocarboxylate transporter 6 product : solute carrier family 16, member 6 isoform b protein_id : NP_598799.1

name	Arsg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54607165 CCDS:CCDS25581.1 GeneID:74008 MGI:1921258
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence ISS] [Evidence IEA] GO_function : GO:0004065 - arylsulfatase activity [Evidence ISS]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004168 - dolichol kinase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Arylsulfatase G protein_id : NP_082986.2

name	Wipi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122367 CCDS:CCDS25582.1 GeneID:52639 MGI:1261864
definition	GO_process : GO:0006914 - autophagy [Evidence IEA] codon_start : 1 product : WD40 repeat protein Interacting with phosphoInositides of 49kDa protein_id : NP_666052.1

name	Prkar1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794476 CCDS:CCDS25583.1 GeneID:19084 MGI:104878
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0031594 - neuromuscular junction [Evidence IDA] GO_function : GO:0030552 - cAMP binding [Evidence IEA]; GO:0008603 - cAMP-dependent protein kinase regulator activity [Evidence IGI] [Evidence IMP] [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008283 - cell proliferation [Evidence TAS]; GO:0001707 - mesoderm formation [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence TAS]; GO:0006468 - protein amino acid phosphorylation [Evidence TAS] codon_start : 1 note : protein kinase, cAMP dependent regulatory, type 1, alpha product : protein kinase, cAMP dependent regulatory, type I, alpha protein_id : NP_068680.1

name	BC029169 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24418883 CCDS:CCDS25584.1 GeneID:208659 MGI:2388266
definition	codon_start : 1 note : ortholog of human family with sequence similarity 20, member A FAM20A product : hypothetical protein LOC208659 protein_id : NP_722477.1

name	1700012B07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82935340 GeneID:69324 MGI:1916574
definition	codon_start : 1 product : hypothetical protein LOC69324 isoform 2 protein_id : XP_900381.1

name	1700023C21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94390909 GeneID:73257 MGI:1920507
definition	codon_start : 1 product : hypothetical protein LOC73257 protein_id : XP_992494.1

name	Abca8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956076 CCDS:CCDS25587.1 GeneID:27404 MGI:1351668
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA] GO_function : GO:0016887 - ATPase activity [Evidence IEA]; GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence ISS] codon_start : 1 exception : mismatches in translation product : ATP-binding cassette, sub-family A (ABC1), member 8b protein_id : NP_038879.1

name	Abca8a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346593 GeneID:217258 MGI:2386846
definition	GO_function : GO:0016887 - ATPase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ATP-binding cassette, sub-family A (ABC1), member 8a protein_id : NP_694785.1

name	Abca9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267466 CCDS:CCDS25589.1 GeneID:217262 MGI:2386796
definition	GO_function : GO:0016887 - ATPase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ATP-binding cassette transporter sub-family A member 9 protein_id : NP_671753.1

name	Abca6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267462 CCDS:CCDS25590.1 GeneID:76184 MGI:1923434
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : ATP-binding cassette transporter sub-family A member 6 product : ATP-binding cassette, sub-family A (ABC1), member 6 protein_id : NP_671751.1

name	Abca5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267468 CCDS:CCDS25591.1 GeneID:217265 MGI:2386607
definition	GO_function : GO:0016887 - ATPase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ATP-binding cassette transporter sub-family A member 5 product : ATP-binding cassette, sub-family A (ABC1), member 5 protein_id : NP_671752.1

name	Map2k6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859654 CCDS:CCDS25592.1 GeneID:26399 MGI:1346870
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0000165 - MAPKKK cascade [Evidence IPI]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 note : protein kinase, mitogen activated, kinase 6; MAP kinase kinase 6 product : mitogen activated protein kinase kinase 6 protein_id : NP_036073.1

name	LOC100041492 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041492
definition	number : 3 pseudo : _no_value

name	LOC100041492 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041492
definition	number : 2 pseudo : _no_value

name	LOC100041492 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041492
definition	number : 1 pseudo : _no_value

name	LOC194985 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262474 GeneID:194985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 24 Proteins product : similar to LOC654472 protein pseudo : _no_value transcript_id : XR_032701.1

name	9930022D16Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262477 GeneID:320509 MGI:2444178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 9930022D16 gene transcript_id : XR_035312.1

clone name	MSMg01-380G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341E24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-376F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061C06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-532F02.T7 (MSMg01no532_f02.b1)	MSMg01-532F02.TJ (MSMg01no532_f02.g1)
ACC	AG600506	AG600507
length	763	753
length of high quality (start - end)	522 (50 - 571)	217 (80 - 296)
definition	CHROMAT_FILE: MSMg01no532_f02.b1 PHD_FILE: MSMg01no532_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:12 2005	CHROMAT_FILE: MSMg01no532_f02.g1 PHD_FILE: MSMg01no532_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:13 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC GCGGAATTCTCTTCTTTCTTATCCCCTCTCTCAGGAGAAGCAACAGAACC ACAGATGAGTGCCACCACCTCTGACTGTATACGGGTGTTGGGAAATTCGA ACTCAGATCCTCACACTCAATCTGTGAGTTCTTTACCCACAAAGCCATCT CCACAACACCTCCCTCTACACACACACACACACACACACACACACACACA CACACACACACACCATTTTGAATAAAGGATTCTGAGTATCTTTGAGAGGT CCTGGAGGCAATTTCCTTCCAATGTCAAGGGACATTCTTCAAACGGCCTT TTCTAGCCATTAAAATATCATGGAGGCTACACGAGTGAATGTCTCAAAAA AAAAAAAAAAGATGTATCGTATTTTATTGAGCTGTCCCTGATTGATGGCT ACTTAGCTTTATTACTGAGGTGACAATGCAATGAGCAGTTTGTTCCTCTT TAGTCTCTCTTGGCCTCTTTCTGAGACAGGTAATAGCAACCAAATTGCTG GGACCAAGGGCAGACAGACACATTGAGGTTTTCCTTCATCTAGATAAATA TTTTTCAGCGTTTCCCCTTTCTGTTATTCCCTCTGCAAGGAAAAATAAAA GAAATTTAGATGATTTTAATTAAATTGATAAAAATAAATTAGAAATTAAT TTAAATTTTCTTCCCTGAAGAAGAGGAAATGAAAAATATGAGCCATGTAA TTGTTTTGGGTTT	NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGCCCACTCCTTCCTGT TATTTCCTGAGCCTTGAGGAAGGAGATGAAACAAATGTTCCATCTTTGAC TGAGTACTCACATTATCTTATTTTCTGATATAGTACTAATTTTAAATACT CTGGCCCATTTCCCCCATCAGAACAAAATAGTTTATGTTGTTGNGGCTAT ACTATTTTCAAAAGAATTTTTCAGATTATTTCTGAAACTATCCCACTAGG GAATTTTGGGGAAAAAAAAAGNNNNNNNNNNNNNNNNNANTAAAAAAAAA AAAAAAAAAAAAAAAANNANNGAAGGGGTGNGGGGAGAGGGGGGAGGGGA GAGAGGAATAAGGAGGGATAGTTTATGTGGTATGATAATTTTATGGGGTT TTATTTTGTTTTTTGTGTGGGTTTAATTTTAAGGTGTTGGTTTTTGTGTT TTTTTTTTTTTTATATTTTTTATTTATTATATGAGTTAAATTGTGTATTG TGATTATTATTATTTATTTTGTTGGAGTTGGGTGTGTGTGTGTTTAGTAG AAATAGAGTTTAATATTTTAGTGGGTTTGTTATTTTTTCGTTTATTTGTA TATCAGATTTTTTTTATGNNGGTTTTATGTTTTTTTTGTTAGCGGGTGAG GTGATGATGTAATTGTTTTTAGGGTTTAGGTTAATTTATTTAATTATTGT TTT
quality values	Open. Hide. 12 12 9 11 12 9 8 13 13 11 15 18 37 39 33 32 27 25 25 37 37 37 37 37 41 37 41 48 48 30 28 28 23 19 15 13 11 15 14 11 12 19 19 28 19 19 22 21 24 26 43 47 57 36 36 36 36 37 42 57 57 53 53 53 35 35 23 23 28 28 26 40 40 54 54 54 57 57 57 50 50 50 50 50 50 51 51 51 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 59 59 59 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 52 62 62 62 62 62 62 62 62 68 68 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 52 45 45 52 57 57 57 57 57 52 52 59 52 57 43 44 33 33 43 44 59 59 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 57 52 52 43 52 52 52 57 57 52 52 54 54 57 57 57 54 57 57 57 57 52 43 43 41 27 27 44 44 46 50 50 54 57 59 59 59 59 59 48 47 47 47 47 47 48 43 43 43 43 43 57 59 59 68 68 68 68 68 59 59 48 48 39 39 37 39 39 46 46 47 47 47 57 57 48 48 41 41 41 48 42 42 32 24 20 20 31 34 59 59 59 59 59 57 57 43 39 39 35 39 39 37 37 35 35 37 34 34 48 48 46 47 47 47 41 39 35 26 25 37 37 34 34 23 22 32 37 37 41 41 36 36 37 59 59 59 59 47 43 41 36 31 28 28 27 32 28 30 22 22 19 28 19 25 25 34 32 31 20 23 22 30 30 24 24 28 27 29 35 37 37 39 40 34 30 22 23 20 32 24 31 28 16 16 17 17 15 21 25 32 39 47 47 59 32 32 20 20 20 16 16 16 19 18 17 18 20 20 22 30 32 23 23 24 22 14 14 20 19 22 11 11 11 16 11 11 10 10 13 15 14 16 19 16 20 22 24 24 25 11 10 12 12 22 22 37 21 18 10 10 10 15 10 12 12 9 10 32 24 13 18 11 11 11 18 15 15 15 24 17 16 16 13 10 10 16 16 25 24 15 15 17 18 22 24 23 25 21 21 12 12 9 9 14 17 25 31 26 33 28 22 20 26 27 26 24 19 25 21 11 13 11 11 9 9 9 13 18 13 10 10 8 12 10 11 8 10 10 10 12 15 15 17 30 17 12 10 9 9 9 9 9 9 9 12 9 10 8 8 9 8 9 8 8 8 8 11 11 16 12 12 10 12 14 9 10 10 13 19 14 14 11 14 15 13 15 12 11 10 10 15 8 8 8 10 10 10 14 14 17 9 9	Open. Hide. 0 3 6 6 7 10 15 8 8 8 8 10 17 34 41 34 32 27 24 23 27 36 37 37 42 50 50 50 50 50 47 47 34 29 16 9 7 7 8 7 7 8 8 10 13 26 22 33 28 28 37 37 36 50 50 50 50 50 57 57 57 59 34 34 15 10 17 13 15 14 15 15 28 23 42 42 42 47 48 57 57 57 57 57 57 54 54 57 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 48 41 42 42 48 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 54 54 57 57 57 59 59 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 59 59 57 57 57 57 57 57 57 57 57 57 53 53 50 48 50 50 46 41 41 19 15 3 0 3 17 19 39 41 59 59 59 50 50 53 53 38 38 50 50 57 57 59 57 57 57 57 50 50 59 57 57 48 48 48 48 41 50 42 41 39 44 19 12 12 12 12 19 32 33 23 21 18 23 19 19 23 22 22 18 21 21 20 24 14 12 17 17 10 10 13 13 19 21 24 19 12 9 9 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 17 18 11 11 11 12 10 10 10 10 8 8 8 8 8 6 6 6 8 10 8 7 7 8 3 0 0 3 0 0 3 6 6 8 8 6 6 6 3 0 3 8 8 6 7 6 6 8 8 8 10 8 9 9 9 9 10 14 9 8 8 6 6 6 8 8 9 15 10 10 9 9 9 9 9 9 9 9 9 9 10 15 11 11 13 11 10 10 10 10 10 8 8 6 6 8 8 10 13 11 9 9 8 7 8 10 8 8 8 10 8 6 6 6 11 8 8 8 8 12 12 10 9 9 8 10 8 8 8 6 9 9 12 11 11 11 10 10 10 10 9 8 8 6 6 8 8 11 11 11 11 13 13 8 10 10 10 11 14 17 15 14 20 22 15 17 10 12 12 17 13 11 10 8 8 10 10 15 16 10 10 8 8 8 8 8 8 10 10 8 6 6 8 8 10 10 8 8 8 8 8 8 9 9 9 9 10 12 17 10 8 8 8 8 9 10 8 9 8 8 6 9 12 10 9 8 8 8 8 6 6 6 8 10 8 9 10 9 14 9 11 10 8 8 8 8 8 8 8 8 6 6 10 8 10 8 10 9 11 10 11 9 9 8 8 10 8 10 10 10 9 7 7 8 8 11 10 8 10 10 16 15 12 11 8 10 8 8 8 9 17 13 15 18 14 10 10 9 9 9 10 8 8 8 8 6 9 6 8 8 8 8 8 10 13 15 18 16 20 27 20 19 16 9 9 12 3 0 0 3 8 8 9 12 8 8 6 6 10 10 10 8 8 7 10 6 6 8 8 6 6 6 7 10 8 13 13 13 12 15 10 8 8 8 8 8 10 10 8 11 8 13 7 6 8 8 10 10 11 11 10 10 10 11 9 9 8 8 8 8 8 8 8 10 10 9 9 8 8 8 8 8 8 10 10 8 8 8 8 10 10 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no532_f02.b1 MSMg01no532_f02.b1 CHROMAT_FILE:
MSMg01no532_f02.b1 PHD_FILE: MSMg01no532_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:12 2005
         (522 letters)



>mm_chr11_109611278_109612199
          Length = 922

 Score =  909 bits (470), Expect = 0.0
 Identities = 506/530 (95%), Gaps = 20/530 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttctttcttatcccctctctcaggagaagcaacagaaccacagatgagtgcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctcttctttcttatcccctctctcaggagaagcaacagaaccacagatgagtgcc 256

                                                                       
Query: 65  accacctctgactgtatacgggtgttgggaaattcgaactcagatcctcacactcaatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 accacctctgactgtatacgggtgttgggaaattcgaactcagatcctcacactcaatct 316

                                                                       
Query: 125 gtgagttctttacccacaaagccatctccacaacacctccctctacacacacacacacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgagttctttacccacaaagccatctccacaacacctccctctacacacacacacacac 376

                                                                       
Query: 185 acacacacacacacacacacacacacacaccattttgaataaaggattctgagtatcttt 244
           ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||
Sbjct: 377 acacacacacacacacacacacac------cattttgaataaaggattctgagtatcttt 430

                                                                       
Query: 245 gagaggtcctggaggcaatttccttccaatgtcaagggacattcttcaaacggccttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagaggtcctggaggcaatttccttccaatgtcaagggacattcttcaaacggccttttc 490

                                                                       
Query: 305 tagccattaaaatatcatggaggctacacgagtgaatgtctcaaaaaaaaaaaaaaa--- 361
           ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||   
Sbjct: 491 tagccattaaaatatcatggaggcttcacgagtgaatttctcaaaaaaaaaaaaaaaaaa 550

                                                                       
Query: 362 -----------gatgtatcgtattttattgagctgtccctgattgatggctacttagctt 410
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaaaaaaaaaagatgtatcgtattttattgagctgtccctgattgatggctacttagctt 610

                                                                       
Query: 411 tattactgaggtgacaatgcaatgagcagtttgttcctctttagtctctcttggcctctt 470
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tattactgaggtgacgatgcaatgagcagtttgttcctctttagtctctcttggcctctt 670

                                                             
Query: 471 tctgagacaggtaatagcaaccaaattgctgggaccaagggcagacagac 520
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctgagacagataatagcaaccaaattgctgggaccaagggcagacagac 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information