BAC Information

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BAC

Clone NameMSMg01-533F17
Chromosome11 (Build37)
Map Location 53,167,505 - 53,167,956
singlet/doubletsinglet
Overlap geneAff4, LOC100040576
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10
Downstream geneLeap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533F17.T7 (MSMg01no533_f17.b1)MSMg01-533F17.TJ (MSMg01no533_f17.g1)
ACCAG601298AG601299
length750747
length of high quality
(start - end)
596 (52 - 647)452 (76 - 527)
definitionCHROMAT_FILE: MSMg01no533_f17.b1 PHD_FILE: MSMg01no533_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:33 2005CHROMAT_FILE: MSMg01no533_f17.g1 PHD_FILE: MSMg01no533_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCCTCTTATAATTGCGTGCGCTAAAAGACTCACTATATTCCGAGGA
TCCGCGGAATTCACTTTGTTTACCAGGCTGGCCTCGAACTCAGAAATCCG
CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACACC
TGGCAAGATTTATTTTTCTTTATGTGTGCATGTGCAGTTACCTATGGAAG
CCAGAAAGAGCTGTCAGGTTCCTTGGAACTTGAGCTATAGGCAGTGGTGA
GCCATGTGACGTTGGTGCTGGGAGCAGATGTCCAGTCCTCTGGGAAGCAG
CAAGTGCTCTTGACTACTGGCTCATCTCTGCAGCCTTGTAAAAATTTTAA
AATTTATTTATTTTATTAAGATCTATTTTATGGGGCCGGAGAGATGGCTC
AGCAGTTCAGAGCACAGATCGCTCTTCCAAAGGTCCTGAGTTCAAATCCC
AGCAACCACATGGTGGCTCACAACCATCTGCAATGAGATCTGACACCCTC
TTCTGGTGTGTCTGAAGATAACTACAGTGTACTTAAATATAATAATAAAT
AAATCTATGGGCTGGAGCAAGCAGGGCTGGAGCAAGCAGAGGTCCTGAGT
TCAATTCCCAGCAACCACATGATGGCTCACAACCATCTGTACAGCTACAG
TGTACTCATATACATAAAAATAAATAAATAAAATCTTTTTTTCAAAAAAG
ATTTTTTTTATGTGTATGGGGATTTTTGCCTGCATGCACAGATATGTGTA

AACCATGATAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTCTGGGAGAGTGTTTGCTAGTT
GTTACTGTGAATACATTGTAGTTAAAGGTTCAAATCTGAGTAGATACACT
TCTTTGTTACTTTGTTACTCTTATTAGCCATCTTGTTACATTTGGAGTGA
CACTATCTAGTACATGGGATAACAATAATAAATATCTTTTTTTTTTTTTT
TTTTTTTTTCCTTTTTTGGTTTTTTGAGACAGGGTTTCTCTATGTAGCCC
TGGCTGTCCTGGAACTCCTCTGTAGACCAGGCTGGCCTTGAAAATATCCC
TCTAATTAACTCTTGCCTTACCACCTGATCCATTTAGCTTGATGTTCATT
TTCACTGGCAGTTTTTATTTTGTTTGTTTTGTTTGATACAAGTCTTCTGT
GTCATTTTGGCTTCAAACTTTCAGCTCTCTTCCTGTCTCAGCCTCTTTCT
TGAGTTCTAGGACTATAGACATGACCACACCTTGAGAATTTTAGTGATAC
TGACACACAGAGAGAAGGAGAGCCAAGTCAATTTAGTTCTGGTTCAATTT
AGTTTTATTTAAATGTTGGAATTAGCTTTTAATCTTATTTTTAAATTAAA
AAAATTTTTTTTGACAGGGTTTATATAGCCCAGTCTGTCCTCTAATTGAA
TGTGTAGCTGGTGCTGGCCTTGAAATTCTCTCTCTCTCTCTCAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_f17.g1 MSMg01no533_f17.g1 CHROMAT_FILE:
MSMg01no533_f17.g1 PHD_FILE: MSMg01no533_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:33 2005
         (452 letters)



>mm_chr11_53167305_53168156
          Length = 852

 Score =  843 bits (436), Expect = 0.0
 Identities = 448/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctgggagagtgtttgctagttgttactgtgaatacattgtagttaaaggttcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctgggagagtgtttgctagttgttactgtgaatacattgtagttaaaggttcaaat 260

                                                                       
Query: 61  ctgagtagatacacttctttgttactttgttactcttattagccatcttgttacatttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagtagatacacttctttgttactttgttactcttattagccatcttgttacatttgg 320

                                                                       
Query: 121 agtgacactatctagtacatgggataacaataataaatatcttttttttttttttttttt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 agtgacactatctagtacatgggataacaataataaatatcctttttttttttttttttt 380

                                                                       
Query: 181 ttttccttttttggttttttgagacagggtttctctatgtagccctggctgtcctggaac 240
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccccttttttggttttttgagacagggtttctctatgtagccctggctgtcctggaac 440

                                                                       
Query: 241 tcctctgtagaccaggctggccttgaaaatatccctctaattaactcttgccttaccacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctctgtagaccaggctggccttgaaaatatccctctaattaactcttgccttaccacc 500

                                                                       
Query: 301 tgatccatttagcttgatgttcattttcactggcagtttttattttgtttgttttgtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatccatttagcttgatgttcattttcactggcagtttttattttgtttgttttgtttg 560

                                                                       
Query: 361 atacaagtcttctgtgtcattttggcttcaaactttcagctctcttcctgtctcagcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacaagtcttctgtgtcattttggcttcaaactttcagctctcttcctgtctcagcctc 620

                                           
Query: 421 tttcttgagttctaggactatagacatgacca 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 tttcttgagttctaggactatagacatgacca 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)