Query= MSMg01no533_k16.b1 MSMg01no533_k16.b1 CHROMAT_FILE:
MSMg01no533_k16.b1 PHD_FILE: MSMg01no533_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:56 2005
(643 letters)
>mm_chr11_37326117_37327159
Length = 1043
Score = 1183 bits (612), Expect = 0.0
Identities = 633/640 (98%), Gaps = 2/640 (0%)
Strand = Plus / Minus
Query: 5 gaattctctatgtttaatcatatttctgccaaatgtcgatccagaaatgaattagcatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaattctctatgtttaatcatatttctgccaaatgtcgatccagaaatgaattagcatct 784
Query: 65 gcctgagatgaataaactgaagactgcctttcccctggaagtcttagagggaagtgtgga 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 783 gcctgagatgaataaactgaagactgcctttaccctggaagtcttagagggaagtgtgga 724
Query: 125 ccacgagctcattccgtgagcactctgtgattgtttctatacatcacagaactgtgttgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ccacgagctcattccgtgagcactctgtgattgtttctatacatcacagaactgtgttgc 664
Query: 185 tcttcttttttttagtagagtcaacatagtcaagaatacttctaaccccggatcctgcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcttcttttttttagtagagtcaacatagtcaagaatacttctaaccccggatcctgcct 604
Query: 245 tcagcagcagccctgctttttcttgcctcggtcagcttacac-ggagttacgcattttaa 303
|||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||
Sbjct: 603 tcagcagcagccctgctttttcttgcctcggtcagcctacacagg-gttatgcattttaa 545
Query: 304 aagaccagccctggttgctttcttgtcattcagttctcttaacagacaaatccttgtggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 544 aagaccagccctggttgctttcttgtcattcagttctcttaacagacaaatacttgtggg 485
Query: 364 gttccagtaatacgggttctgaaaaaccacagtgggttaagagcacccagcagtgcctag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttccagtaatacgggttctgaaaaaccacagtgggttaagagcacccagcagtgcctag 425
Query: 424 gcaaagagaagcatgaagggtgaggccgctgggatacccagcagccctgggcttctgact 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtaaagagaagcatgaagggtgaggccgctgggatacccagcagccctgggcttctgact 365
Query: 484 gtgaacatgatcaacagctctgagagtctttcatggcttgtgtgacacgcagtgctgtat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtgaacatgatcaacagctctgagagtctttcatggcttgtgtgacacgcagtgctgtat 305
Query: 544 gctgaatgcctagtaattagtctcttctgtatgcctattgtgggatccaattgttcttct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctgaatgcctagtaattagtctcttctgtatgcctattgtgggatccaattgttcttct 245
Query: 604 gaccatgagagacagacgactttggtagagatgaaaatgt 643
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gaccatgagagacagacgactttggtagagatgaaaatgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_k16.g1 MSMg01no533_k16.g1 CHROMAT_FILE:
MSMg01no533_k16.g1 PHD_FILE: MSMg01no533_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:56 2005
(609 letters)
>mm_chr11_37253661_37254669
Length = 1009
Score = 1131 bits (585), Expect = 0.0
Identities = 601/609 (98%), Gaps = 5/609 (0%)
Strand = Plus / Plus
Query: 1 actgtttattgcatgaaaagcaaattaagttaagcattcaacacacatatatttcctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtttattgcatgaaaagcaaattaagttaagcattcaacacacatatatttcctgcc 260
Query: 61 ttgcaggatttctcctgattttgtcaagtattttcttagttttacacttactgtgaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcaggatttctcctgattttgtcaagtattttcttagttttacacttactgtgaaata 320
Query: 121 actgtgtgggtgaatgtatatgttatgtgtacccggaaatataagtaacagtaccaagaa 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 actgtgtgggtgaatgtatatgttatgtgtacccggaaatataagtgacagtaccaagaa 380
Query: 181 gtgacagatctcaaagcttctgtaccacgagtgaaagaaacactgagtaaaactaagaga 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgacaaatctcaaagcttctgtaccacgagtgaaagaaacactgagtaaaactaagaga 440
Query: 241 cagcccaaagagatgaataagatattttcaggccataaattcaataagggtttaataact 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcccaaagagatgaata-----ttttcaggccataaattcaataagggtttaataact 495
Query: 301 agaatttaaatattttagcagtaaaacctcatacacaatccaatataaattatgggctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agaatttaaatattttagcagtaaaacctcatacacaatccaatataaattatgggctga 555
Query: 361 taaatgtttagtcttttctctaaataagacaaaagggcacaaaatatgtatgaaaacaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taaatgtttagtcttttctctaaataagacaaaagggcacaaaatatgtatgaaaacaat 615
Query: 421 gctcaaattttgctaacaatcaaggtaaacacaaataaaaccataatgagacaacatatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gctcaaattttgctaacaatcaaggtaaacacaaataaaaccataatgagacaacatatt 675
Query: 481 tcaatttaaataattactatcaaacaacaacaggaaagcaagttatcaagggcacagagg 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcaatttaaataattattatcaaacaacaacaggaaagcaagttatcaagggcacagagg 735
Query: 541 acagagggctcctgtattttctgttggggatgcatttatgagaaacagtataggcaggta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 acagagggctcctgtattttctgttggggatgcatttatgagaaacagtataggcaggta 795
Query: 601 ctcctcagt 609
|||||||||
Sbjct: 796 ctcctcagt 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
