Query= MSMg01no534_a22.b1 MSMg01no534_a22.b1 CHROMAT_FILE:
MSMg01no534_a22.b1 PHD_FILE: MSMg01no534_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:25 2005
(613 letters)
>mm_chr11_81218329_81219341
Length = 1013
Score = 1162 bits (601), Expect = 0.0
Identities = 607/609 (99%)
Strand = Plus / Minus
Query: 5 gaattcactctcctaaagatttcacactaatgtctaattcctacttgtagctgccttctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaattcactctcctaaagatttcacactaatgtctaattcctacttgtagctgccttctg 754
Query: 65 ggaagggtcctacccttcctttttcagtataggaaatcataggtcaagtaagtaagtaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ggaagggtcctacccttcctttttcagtataggaaatcataggtcaagtaagtaagtaca 694
Query: 125 ggctaggactgacacacaggttctagtacacaaagcccgggctgtcacttatacagtgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ggctaggactgacacacaggttctagtacacaaagcccgggctgtcacttatacagtgtg 634
Query: 185 tcccttcctgggtcttacatttaggaaagaaaaccagtgcaacattgggagtaggtgaga 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 633 tcccttcctgggtcttacatttaggaaagaaaaccagtgcagcattgggagtaggtgaga 574
Query: 245 gacttcttgtgttactgagggggagatagtgtttattattttgatgcctttcctatcctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gacttcttgtgttactgagggggagatagtgtttattattttgatgcctttcctatcctt 514
Query: 305 agcaacattctggtccatcctaagttcacctttccagcagccaagtcctccaccccagcc 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 513 agcaacattctggtccatcctaagttcccctttccagcagccaagtcctccaccccagcc 454
Query: 365 tggcaggaggcaaatcttcccaatactctgtaataataggctttggaaactgggttacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tggcaggaggcaaatcttcccaatactctgtaataataggctttggaaactgggttacaa 394
Query: 425 ggaaaaccacctctcatttcctctgataagtgaaaagctattcagcaaaggccctttctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggaaaaccacctctcatttcctctgataagtgaaaagctattcagcaaaggccctttctt 334
Query: 485 tttcagggcccctccaggtttgttaactctctgaaaacactgcttataaaatagcacttg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttcagggcccctccaggtttgttaactctctgaaaacactgcttataaaatagcacttg 274
Query: 545 aagcaggcagtgcagacagccaggaagcaatggaggatgggattttaatacggtccacgc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aagcaggcagtgcagacagccaggaagcaatggaggatgggattttaatacggtccacgc 214
Query: 605 tgtgaggca 613
|||||||||
Sbjct: 213 tgtgaggca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_a22.g1 MSMg01no534_a22.g1 CHROMAT_FILE:
MSMg01no534_a22.g1 PHD_FILE: MSMg01no534_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:25 2005
(643 letters)
>mm_chr11_81154177_81155219
Length = 1043
Score = 1139 bits (589), Expect = 0.0
Identities = 635/663 (95%), Gaps = 20/663 (3%)
Strand = Plus / Plus
Query: 1 ttgtctctgatcatttcagcagccttgaggtaagactgtgataagctccacttcacagac 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtctctgatcatctcagcagccttgaggtaagactgtgataagctccacttcacagac 260
Query: 61 aaggagcatgagggttagagtttccatgactttcccacagttacactgagcgaaaccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aaggagcatgagggttagagtttccatgactttcccacagttacactgagcaaaaccaca 320
Query: 121 ggatctagaactcgaggccaagtgtgttcttctgtacatccagtttccacactccctcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatctagaactcgaggccaagtgtgttcttctgtacatccagtttccacactccctcac 380
Query: 181 cacgtcacggtcaacctgtggagcaagactcatttttctaccacctaaccttggggagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacgtcacggtcaacctgtggagcaagactcatttttctaccacctaaccttggggagtt 440
Query: 241 cccagtttggagacctacaaccctgagggagaactgcttggtcgactccccagagcgtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagtttggagacctacaaccctgagggagaactgcttggtcgactccccagagcgtac 500
Query: 301 ttgctctgaatgtatctgttgaacatcttgagtaaacagacagtgggaatacaccccagc 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ttgctctgaatgtatctgttgaacatcttgagtaaacagacagtgggaacacaccccagc 560
Query: 361 agcatcaccactttctccgggatgaagtattctcctttctctgactccacttctacagag 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcatcaccactttccccgggatgaagtattctcctttctctgactccacttctacagag 620
Query: 421 aatagactacgactattctctgccaacacgactagaaatacgtgactaagaaacacagag 480
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 621 aatagactacgactattctctgccaacacgactagaaataagtgactaagaagcacagag 680
Query: 481 atgaatgagggaggggagcatagggagagggcaaagaggcaggaacaggcagggagtctt 540
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaatgaggcaggagagcatagggagagggcaaagaggcaggaacaggcagggagtctt 740
Query: 541 caggatgaagaaagacccatcaggaaga--------------------cctcctgcattc 580
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 caggatgaagaaagacccatcaggaagaaaagctattcctgagtggggcctcctgcattc 800
Query: 581 ctacaccacagagacctgctgagcctcctgctgcctccagaacaatctacatgttttgga 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctacaccacagagacctgctgagcctcctgctgcctccagaacaatctacatgttttgga 860
Query: 641 tcc 643
|||
Sbjct: 861 tcc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
