Query= MSMg01no535_e24.b1 MSMg01no535_e24.b1 CHROMAT_FILE:
MSMg01no535_e24.b1 PHD_FILE: MSMg01no535_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:05 2005
(684 letters)
>mm_chr11_37791866_37792949
Length = 1084
Score = 959 bits (496), Expect = 0.0
Identities = 539/566 (95%), Gaps = 21/566 (3%)
Strand = Plus / Minus
Query: 6 ggaattcaatatacatctctctctaccaatatcatccaggggagatgtctgcatgcatgg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaattcaatatacatctctctctaccaatatcatccaggggagatgtctgcatgcatgg 507
Query: 66 atgcaattatttgagatgaaaacgctttctgccattgtatattttataccataatatgac 125
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 506 atgcaattatttgagatgaaaacgctttctgccatggtatattttataccataatatgac 447
Query: 126 aaaacagtcatattgcctgtgcattagaacgattggggaggaaaatgaatagcgcttagg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaaacagtcatattgcctgtgcattagaacgattggggaggaaaatgaatagcgcttagg 387
Query: 186 ttacttatattcatttttatgtatgccatttatttatagctatggagaataatatctact 245
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 386 ttacttatattcgtttttatgtatgacatttatttatagctatggagaataatatctact 327
Query: 246 tcttaaattctcaagatattgaggcctactagaaatagtagtaacaagattcatgggaat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcttaaattctcaagatattgaggcctactagaaatagtagtaacaagattcatgggaat 267
Query: 306 attatatgagtttaccacctagttactatgcagagagtaccttatatgtttccttccttt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attatatgagtttaccacctagttactatgcagagagtaccttatatgtttccttccttt 207
Query: 366 gattatttaatatttataactatatatata--tatata-------------------aat 404
|||||||||||||||||||||||||||||| |||||| |||
Sbjct: 206 gattatttaatatttataactatatatatacatatatatattttatatatatattttaat 147
Query: 405 ttacagaagatacataggacttttagactcaatatactaataaaccagtacccagtgggg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 146 ttacagaagatacataggacttttagactcaatatactaataaaccagtaccccgtgggg 87
Query: 465 agaaaagaaagaaatagaacccatcttcttagatgcttatcctactgacagtagtaagag 524
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 agaaaacaaagaaatagaacccatcttcttagatgcttatcctactgacagtagtaagac 27
Query: 525 gggtatggaaagatatgcagatcatc 550
||||||||||||||||||||||||||
Sbjct: 26 gggtatggaaagatatgcagatcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_e24.g1 MSMg01no535_e24.g1 CHROMAT_FILE:
MSMg01no535_e24.g1 PHD_FILE: MSMg01no535_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:06 2005
(635 letters)
>mm_chr11_37612765_37613799
Length = 1035
Score = 1205 bits (623), Expect = 0.0
Identities = 632/635 (99%), Gaps = 1/635 (0%)
Strand = Plus / Plus
Query: 1 acttgctggtcactggagtgtcaatacaaccttgacactttatgatttttttcttgattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 acttgctggtcactggagtgtcaatacaaccttgacactttatgatttttt-cttgattt 260
Query: 61 ttttggtaacttttaatataatatattctgactatgctttttcctcccaagcttttctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttggtaacttttaatataatatattctgactatgctttttcctcccaagcttttctga 320
Query: 121 gatctaccccacccacaggatttcctgcccccttctctcccttgcttttaaaaataaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatctaccccacccacaggatttcctgcccccttctctcccttgcttttaaaaataaatg 380
Query: 181 aaacattgagatttttttcccatccttatctttctagttattttctttacccaactgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacattgagatttttttcccatccttatctttctagttattttctttacccaactgcat 440
Query: 241 tgtggtcaaagccgtctggtagtcaaactgagactctagtgggcagaatttccactataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggtcaaagccgtctggtagtcaaactgagactctagtgggcagaatttccactataa 500
Query: 301 gtgtccatcaaagcatgtctttactgaaccacaaagtaagaataagacagaccctgaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtccatcaaagcatgtctttactgaaccacaaagtaagaataagacagaccctgaggt 560
Query: 361 tctttctctatctgtgattgacagagtgctactctgggtacaacagtgttatctctatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttctctatctgtgattgacagagtgctactctgggtacaacagtgttatctctatgt 620
Query: 421 tttaaggcaaacatggatggaactaagcaattattcttctaattaaacctgcagaatctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaaggcaaacatggatggaactaagcaattattcttctaattaaacctgcagaatctc 680
Query: 481 taagacagcctcatatgtacctattggctaccatatgaaaaacagccttcttcagtattg 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 taagacagcctcatatgtacctattggctaccatatgaaaaacagccctcttcagtattg 740
Query: 541 agttttgtgtagcctgaaaacgcctatacacgaagatcaaggctgtgtcagggctctgtt 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttttgcgtagcctgaaaacgcctatacacgaagatcaaggctgtgtcagggctctgtt 800
Query: 601 tgctctgatctttatatgcaagggtaagcacaaag 635
|||||||||||||||||||||||||||||||||||
Sbjct: 801 tgctctgatctttatatgcaagggtaagcacaaag 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
