NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTCAGTGAGTGGTTACATCCGCCCCACTAACTGAATGATT
GATTCACCCCAGAATCAATCAAATGCTAATAGCTCTTCAGTGAGGGCTTG
GACATGACTTTATTCAGTCTTTGCTGAATTGTAACTAGGGTGATCTTATT
CAGATACTATTAGTGTGACCCCAGATATGGCTCTTGATTGTAATAGCCAG
CTCTTGTATCCTTTCCAAGTCCTTTGCTGTGATGTTCGCTGAGCCTTGAG
GTAGGAGAAATATAGTTGTGAAATTTAGGGCTGAGCGAGCATTCAGTCTT
TTCTTTTTAGCACTTTTACCAACTACTTATCTCTCCATATCTTCTGTCTA
CCTCCAACAGAAGCTTCTCTGACCAATGTTGAAAGCAACCCCAATGTATT
GGAATAAACATACAAATTTATAAGGTATGTTGACAGTGTATTCATCTAGC
ATTAACAACAACGGGTTCTACCCCAGGGCCCATGATCTTCCCAGCCATTG
GCTATTGACCAGGATTACAATACCATGCACAACACTCTGCAGCAGAACTC
ANATCCAATCATTTGATTAGCTACCCCATACATTTATGCCACGCTATTGT
ACCAGCTGGGCATATTTTGCATGTCAGGTTGGTATTAAAATATGCAGAAT
TCAGTGTGAGGTAAGAAGACTGGTGATATTCTAAGCAGCTGTTGGAAGGG

NNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGGTTGAAACAAATTTCA
AATATGGAAAAAGCAGACATCACTTGACATTCTGTAAAGTAGCAGATGGT
AGCACTATTGTGTAATTTTAATGCACTTCAGGGCTGGGAAGCATATTTGG
GTATTAAAACATTGTATCCTTCCATCTCCCTTAAACACATTAATTTTAAG
CTTCTTAAATTCACAAACACATACAGTATGTTTTATGATATACAGTAAAA
CTCTTCTCAACTTTATTTTCAGTTTTAGTTGGAGAAACACACAGCCACCT
CTCACTATAAGTACTTTAGGCGGTGGGGCTTGAAAAGCGTAACACTTGGG
AAGCCTCTCTCTCTCTCTCTCTTTCTTTTTTTTTTTAGTGTTCTAGTTCT
AGTGTTTGAAATAGGGTTGCTAATTTATGAGCTTGCCATGGTGTGCAATG
TGAGTAATAGCAGCAGATGCCTCGGTACTTCGGTTTGATCAAGAATATCA
GGCTATGTAAAAAGCTATTAATGAACCACAAGTATTTTACTTCTGTTACA
CATGTCAGTAGTGAGTATGTCTTAATGCAAAATGTGCTTTTAAGAGAGAA
AGACAGGAGAAGTAGATTTAGCATCACTCATGTTTGAATTTTTTTTTGGA
GAAAGTTGAGAAGTCCTTTTGATTCTAATCATGATTAAGCTCCTCTATN

Query= MSMg01no535_g17.g1 MSMg01no535_g17.g1 CHROMAT_FILE:
MSMg01no535_g17.g1 PHD_FILE: MSMg01no535_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:14 2005
         (622 letters)



>mm_chr11_41378988_41380005
          Length = 1018

 Score = 1000 bits (517), Expect = 0.0
 Identities = 602/659 (91%), Gaps = 46/659 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggggttgaaacaaatttcaaatatggaaaaagcagacatcacttgacattctgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 actggggttgaaacaaatttcaaatatggaaaaagcagacatcacttgacattctgtaaa 218

                                                                       
Query: 61  gtagcagatggtagcactattgtgtaattttaatgcacttcagggctgggaagcatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gtagcagatggtagcactattgtgtaattttaatgcacttcagggctgggaagcatattt 278

                                                                       
Query: 121 gggtattaaaacattgtatccttccatctcccttaaacacattaattttaagcttcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gggtattaaaacattgtatccttccatctcccttaaacacattaattttaagcttcttaa 338

                                                                       
Query: 181 attcacaaacacatacagtatgttttatgatatacagtaaaactcttctcaactttattt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 339 attcacaaacacatacagtatgttttatgatatacagtaaaaatcttctcaactttattt 398

                                                                       
Query: 241 tcagttttagttggagaaacacacagccacctctcactataagtactttaggcggtgggg 300
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 399 tcagttttagttggagaaacacacagccacctctcactgtaagtactttaggcggtaggg 458

                                                                       
Query: 301 cttgaaaagcgtaacacttgggaagcctctctctctctctctctttcttttttt-t---- 355
           |||||||||| ||||||||||||||||||||||||||||||||| ||| | | | |    
Sbjct: 459 cttgaaaagcataacacttgggaagcctctctctctctctctctctctctctctctctct 518

                                                                       
Query: 356 -------------------------------------tttagtgttctagttctagtgtt 378
                                                ||||||| |||||||||||||||
Sbjct: 519 ctctctctctctctctctctctctctctctctctctctttagtgctctagttctagtgtt 578

                                                                       
Query: 379 tgaaatagggttgctaatttatgagcttgccatggtgtgcaatgtgagtaatagcagcag 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 579 tgaaatagggttgctaatttatgagcttgccatggtgtgcaatgtgagtaatagcggcag 638

                                                                       
Query: 439 atgcctcggtacttcggtttgatcaagaatatcaggctatgtaaaaagctattaatgaac 498
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atgcctc----cttcggtttgatcaagaatatcaggctatgtaaaaagctattaatgaac 694

                                                                       
Query: 499 cacaagtattttacttctgttacacatgtcagtagtgagtatgtcttaatgcaaaatgtg 558
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cacaagtattttatttctgttacacatgtcagtagtgagtatgtcttaatgcaaaatgtg 754

                                                                      
Query: 559 cttttaagagagaaagacaggagaagtagatttagcatcactcatgtttgaattttttt 617
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cttttaagagagaaagacaggagaagtagatttagcatcactcatgtttgaattttttt 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1018
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1008
Effective search space:   616896
Effective search space used:   616896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)